# Config file for Illumina Sample Sheet Creation [GENERAL] facilityName = Quantitative Genomics Facility facilityNameShort = QGF facilityInstitution = ETHZ_D-BSSE mailList = mail@ethz.ch mailFrom = SampleSheetCreator@ethz.ch smptHost = smtphost.ethz.ch SampleSheetFileName = SampleSheet separator = , indexSeparator = - [OPENBIS] openbisServer = http://: openbisUserName = openbisPassword = connectionTimeout = 5000 illuminaFlowCellTypeName = ILLUMINA_FLOW_CELL index1Name = BARCODE index2Name = INDEX2 index1Length = INDEXREAD index2Length = INDEXREAD2 endType = END_TYPE cycles = CYCLES_REQUESTED_BY_CUSTOMER controlLane = CONTROL_LANE ncbi = NCBI_ORGANISM_TAXONOMY externalSampleName = EXTERNAL_SAMPLE_NAME laneCount = LANECOUNT [ILLUMINA] hiSeqNames = SN792 SN100 miSeqNames = M00721 M00100 hiSeqHeader = FCID,Lane,SampleID,SampleRef,Index,Description,Control,Recipe,Operator,SampleProject miSeqHeaderSection = [Header], IEMFileVersion, Investigator Name, Project Name,Experiment Name, Date, Workflow, Application, Assay, Description, Chemistry miSeqReadsSection = [Reads] miSeqSettingsSection = [Settings], Adapter miSeqDataSection = [Data], Sample_ID Sample_Name Sample_Plate Sample_Well I7_Index_ID index Sample_Project Description miSeqWorkflow = GenerateFASTQ miSeqApplication = FASTQ Only miSeqChemistry = Amplicon truSeqAdapter = Adapter,AGATCGGAAGAGCACACGTC nexteraAdapter = Adapter,CTGTCTCTTATACACATCT iemFileVersion = 4 configureBclToFastqPath = /usr/local/bin/configureBclToFastq.pl failedReads = --with-failed-reads clusterCount = --fastq-cluster-count clusterCountNumber = 50000000 outputDir = --output-dir sampleSheetName = --sample-sheet baseMask = --use-bases-mask