- CACHE_WORKSPACE_FOLDER_KEY - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.content.ContentCache
-
- CACHE_WORKSPACE_MAX_SIZE_KEY - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.content.ContentCache
-
- CACHE_WORKSPACE_MIN_KEEPING_TIME_KEY - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.content.ContentCache
-
- calculateFreeSpace() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Calculates the actual free space (in bytes) of the hard disk on which this share resides.
- callWithRetry() - Method in class ch.systemsx.cisd.common.api.retry.RetryCaller
-
- ch.systemsx.cisd.common.api - package ch.systemsx.cisd.common.api
-
- ch.systemsx.cisd.common.api.retry - package ch.systemsx.cisd.common.api.retry
-
- ch.systemsx.cisd.common.api.retry.config - package ch.systemsx.cisd.common.api.retry.config
-
- ch.systemsx.cisd.common.exceptions - package ch.systemsx.cisd.common.exceptions
-
- ch.systemsx.cisd.openbis.dss.client.api.v1 - package ch.systemsx.cisd.openbis.dss.client.api.v1
-
- ch.systemsx.cisd.openbis.dss.client.api.v1.impl - package ch.systemsx.cisd.openbis.dss.client.api.v1.impl
-
- ch.systemsx.cisd.openbis.dss.generic.shared.api.v1 - package ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
-
- ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation - package ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
-
- ch.systemsx.cisd.openbis.dss.generic.shared.content - package ch.systemsx.cisd.openbis.dss.generic.shared.content
-
- ch.systemsx.cisd.openbis.dss.generic.shared.dto - package ch.systemsx.cisd.openbis.dss.generic.shared.dto
-
- ch.systemsx.cisd.openbis.dss.generic.shared.utils - package ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1 - package ch.systemsx.cisd.openbis.generic.shared.api.v1
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.filter - package ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
-
- ch.systemsx.cisd.openbis.generic.shared.api.v1.util - package ch.systemsx.cisd.openbis.generic.shared.api.v1.util
-
- ch.systemsx.cisd.openbis.plugin.query.client.api.v1 - package ch.systemsx.cisd.openbis.plugin.query.client.api.v1
-
API Facade
- ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto - package ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto
-
Data Transfer Objects
- check(List<? extends IDatasetLocation>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DataSetAndPathInfoDBConsistencyChecker
-
- checkSession() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
-
Checks whether the session is alive.
- checkSession() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
- checkSession() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- checkSession() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Checks whether the session is alive.
- cleanUp(SimpleDataSetInformationDTO, File, String, IShareIdManager, ISimpleLogger) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SegmentedStoreUtils
-
Deletes specified data set in the old share if it is already in the new one or in the new one
if it is still in the old one.
- close() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContent
-
- close() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- CodeAndLabelUtil - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Utility class to operate on codes and labels.
- CodeAndLabelUtil() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CodeAndLabelUtil
-
- compareTo(Attachment) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
- COMPOUND - Static variable in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
-
Material identifier for a compound.
- ConfigurationFailureException - Exception in ch.systemsx.cisd.common.exceptions
-
The ConfigurationFailureException
is the super class of all exceptions that have
their cause in an inappropriate configuration of the system.
- ConfigurationFailureException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.ConfigurationFailureException
-
- ConfigurationFailureException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.ConfigurationFailureException
-
- ContentCache - Class in ch.systemsx.cisd.openbis.dss.generic.shared.content
-
Cache for files remotely retrieved from Data Store Servers.
- ControlledVocabularyPropertyType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- ControlledVocabularyPropertyType(ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType
-
- ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer
-
- ControlledVocabularyPropertyType.VocabularyTerm - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- ControlledVocabularyPropertyType.VocabularyTerm(String, String, Long, Boolean, EntityRegistrationDetails) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.VocabularyTerm
-
- convertForDisplayIfNecessary(BufferedImage) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
If the specified image uses grayscale with color depth larger then 8 bits, conversion to 8
bits grayscale is done.
- convertForDisplayIfNecessary(BufferedImage, float) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
If the specified image uses grayscale with color depth larger then 8 bits, conversion to 8
bits grayscale is done.
- convertPatternListToString(List<String>) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetTypeFilter
-
Takes a List of patterns and serializes them to a single string that this class can later
reread.
- copyToDirectoryAs(File, File, String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.AbstractDatasetDropboxHandler
-
- create(T) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
-
- create(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.ContentCache
-
- create() - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.PathInfoDBAwareHierarchicalContentFactory
-
Returns implementation of IHierarchicalContentFactory
based on configuration of Path
Info DB.
- create() - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.PathInfoDBOnlyHierarchicalContentFactory
-
- create(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CodeAndLabelUtil
-
Creates an instance from specified label with optional code prefix in form of
<code>
.
- create(String, String, String) - Static method in class ch.systemsx.cisd.openbis.plugin.query.client.api.v1.FacadeFactory
-
Creates a facade for specified server URL, user Id, and password.
- create(String, String) - Static method in class ch.systemsx.cisd.openbis.plugin.query.client.api.v1.FacadeFactory
-
Creates a facade for specified url and sessionToken.
- createAnyFieldMatch(String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
Factory method to create a MatchClause matching against any property or attribute.
- createAnyPropertyMatch(String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
Factory method to create a MatchClause matching against any property.
- createAttributeMatch(SearchCriteria.MatchClauseAttribute, String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
Factory method to create a MatchClause matching against a specific attribute.
- createDataSetChildCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createDataSetContainerCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createDataSetParentCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createDataSetTypeValidationError(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
-
- createError(boolean) - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
Create an error.
- createError(boolean, String) - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
- createError() - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
- createError(String) - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
- createError(String, Object...) - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
- createError(boolean) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
-
Create an error.
- createError(boolean, String) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
-
- createError() - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
-
- createError(String) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
-
- createExperimentCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createFileValidationError(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
-
- createHelper(BufferedImage) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.PngWritingHelper
-
- createMasqueradingExceptionIfNeeded(Exception, Collection<String>) - Static method in class ch.systemsx.cisd.common.exceptions.ExceptionUtils
-
Analyzes given exception and makes it independent to packages outside the
specified collection or java.lang, ch.systemsx.cisd.common
.
- createMetaproject(String, String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Creates a new metaproject.
- createOwnerValidationError(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
-
- createPropertyMatch(String, String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
Factory method to create a MatchClause matching against a specific property.
- createPropertyValidationError(String, String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
-
- createProxy(T) - Static method in class ch.systemsx.cisd.common.api.retry.RetryProxyFactory
-
- createReport() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DataSetAndPathInfoDBConsistencyChecker
-
- createReportFromAggregationService(String, String, Map<String, Object>) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Create the report from the specified aggregation service.
- createReportFromAggregationService(AggregationServiceDescription, Map<String, Object>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
Executes the specified aggregation or ingestion service for the specified parameters and
creates a report.
- createReportFromDataSets(String, String, List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Creates for the specified data sets a report.
- createReportFromDataSets(ReportDescription, List<String>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
Creates for the specified data sets and specified report description a report.
- createReportFromDataSets(String, List<String>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
Creates for the specified data sets and specified report key a report.
- createRetriableError() - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
- createRetriableError(String) - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
- createRetriableError(String, Object...) - Static method in class ch.systemsx.cisd.common.exceptions.Status
-
- createRetriableError() - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
-
- createRetriableError(String) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
-
- createSampleChildCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createSampleContainerCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createSampleCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createSampleParentCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- createThumbnailForDisplay(BufferedImage, int, int) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Re-scales the image to be the biggest one which fits into a (0,0,maxWidth, maxHeight)
rectangle.
- createTimeAttributeMatch(SearchCriteria.MatchClauseTimeAttribute, SearchCriteria.CompareMode, String, String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
Factory method to create a MatchClause matching against registration or modification
date.
- createValidatorFromScriptPaths(String[]) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
-
Factory method for creating a ValidationScriptRunner given a path to a script.
- createValidatorFromScriptPaths(String[], boolean) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
-
Factory method for creating a ValidationScriptRunner given a path to a script.
- createValidatorFromScriptString(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
-
Factory method for creating a ValidationScriptRunner given the script as a string.
- createValidatorFromScriptString(String, boolean) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
-
Factory method for creating a ValidationScriptRunner given the script as a string.
- CsvFileReaderHelper - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
- CsvFileReaderHelper() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper
-
- CsvFileReaderHelper.DefaultCsvFileReaderConfiguration - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Default configuration for reading csv file:
';' - column delimiter
'#' - comment delimiter
ignoring empty records
- CsvFileReaderHelper.DefaultCsvFileReaderConfiguration() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultCsvFileReaderConfiguration
-
- CsvFileReaderHelper.DefaultTsvFileReaderConfiguration - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Default configuration for reading TSV file:
- CsvFileReaderHelper.DefaultTsvFileReaderConfiguration() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultTsvFileReaderConfiguration
-
- CsvFileReaderHelper.ICsvFileReaderConfiguration - Interface in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Configuration for reading csv file.
- GENE - Static variable in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
-
Material identifier for a gene.
- getAttachmentHolderId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- getAttachmentHolderId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
Returns the id of the entity holding this attachment.
- getAttribute() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.AttributeMatchClause
-
Return the code of the attribute to compare against.
- getAttribute() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.TimeAttributeMatchClause
-
Return the code of the attribute to compare against.
- getAugmentedCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
-
- getChecksumCRC32() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getChecksumCRC32() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- getChildNodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getChildren() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
Deprecated.
- getChildren() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Return the children.
- getChildren() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getChildrenCodes() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getChildrenCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getChildrenCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
Return the children codes.
- getChildrenJson() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- getClassName() - Method in class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
-
- getCode() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getCode() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
-
The code of this data set.
- getCode() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
Returns the data set code;
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStore
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityType
-
Returns the unique entity type code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
Returns the experiment code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset.DataSetCodeId
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material.MaterialCodeAndTypeCodeId
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Return the term's code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
-
Returns the project code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
Return the code of this property type.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
-
Returns role code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns the sample code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
-
Returns the space code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Returns the vocabulary code.
- getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
-
- getCodePrefix() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Returns code prefix used to create sample code automatically.
- getCodePrefix() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- getCols() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.PngWritingHelper
-
- getColumnDelimiter() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultCsvFileReaderConfiguration
-
- getColumnDelimiter() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultTsvFileReaderConfiguration
-
- getColumnDelimiter() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.ICsvFileReaderConfiguration
-
- getColumns() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableModel
-
Returns columns as specified in the constructor.
- getCommentDelimiter() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultCsvFileReaderConfiguration
-
- getCommentDelimiter() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.ICsvFileReaderConfiguration
-
- getCompareMode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
- getContainedDataSetCodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getContainedDataSets() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getContainedDataSets() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getContainedDataSets() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getContainerOrNull() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getContainerOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getContainerOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getCriteria() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- getCsvReader(File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper
-
Get a CsvReader for parsing a tabular data file with default configuration.
- getCsvReader(File, CsvFileReaderHelper.ICsvFileReaderConfiguration) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper
-
Get a CsvReader for parsing a tabular data file with specified configuration.
- getDataLines() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines
-
- getDataLines() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.utils.ITabularData
-
- getDataSet(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
-
Get a proxy to the data set designated by the given data set code.
- getDataSet(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
- getDataSet(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getDataSet(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return a
DataSet
object for for the given code.
- getDataSetCode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataSetFileDTO
-
The code of the data set that owns this file
- getDataSetCode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getDataSetCodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetCodesWithStatus
-
- getDataSetCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStoreURLForDataSets
-
A set of data sets that can be found in this data store.
- getDataSetDss() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
Internal accessor, made public for testing, but clients should not need it.
- getDataSetDss(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getDatasetFileLines(File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper
-
Return the tabular data as a DatasetFileLines with default configuration.
- getDatasetFileLines(File, CsvFileReaderHelper.ICsvFileReaderConfiguration) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper
-
Return the tabular data as a DatasetFileLines with specified configuration.
- getDataSetFolderName() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
The name of the folder containing the files in the data set.
- getDataSetInformation() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetRegistrationInformation
-
- getDataSetKind() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- getDataSetKind() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
-
Returns the kind of data sets of this type.
- getDatasetLocationPath(File, String, String, String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetLocationUtil
-
Creates a location where a dataset can be found in a specified base directory.
- getDatasetLocationPath(String, String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetLocationUtil
-
returns location (path relative to the share)
- getDatasetLocationPathCheckingIfExists(String, String, DatabaseInstance, File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetLocationUtil
-
Creates a location where a dataset can be found in a specified base directory.
- getDataSetMetadata() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
The metadata data for the data set, including type and properties.
- getDataSetMetaData(String, List<String>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns meta data for all specified data sets.
- getDataSetMetaData(String, List<String>, EnumSet<DataSetFetchOption>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns meta data for all specified data sets.
- getDataSetOwner() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
The direct owner of the data set, either an experiment or a sample.
- getDataSetOwner() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
The owner may be null during construction but is non-null in a well-formed object.
- getDataSetOwnerIdentifier() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
The owner identifier may be and empty during construction but is non-null in a well-formed
object.
- getDataSetOwnerType() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
The owner type should never be null.
- getDataSetProperties() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getDataSetRegistrations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getDataSets(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getDataSets(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return
DataSet
objects for given a set of codes.
- getDataSets() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- getDataSets() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
-
- getDataSetsOrderedBySize() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Returns all data sets of this shared ordered by size starting with the largest data set.
- getDataSetType() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getDataSetTypeCode() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getDataSetTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getDataSetTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getDataSetTypes() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- getDataSetUpdates() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getDataSource() - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.PathInfoDataSourceProvider
-
- getDataStoreBaseUrl() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
Returns the base URL of the data store that provides this service.
- getDataStoreBaseURLs(String, List<String>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns the download URL for the data store of specified data sets.
- getDataStoreCode(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getDataStoreCode() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
The code of the data store that provides this service.
- getDataStoreCode() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- getDataStoreURL() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStoreURLForDataSets
-
The base URL of the data store.
- getDataStoreUrlFromDownloadUrl(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataStoreApiUrlUtilities
-
Converts the download url to a server url.
- getDataStreamMaxTimeout(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getDataStreamTimeout(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getDataType() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
- getDataType() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- getDataType() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableColumn
-
Returns the data type.
- getDefaultPutDataStoreBaseURL(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns the URL for the default data store server for this openBIS AS.
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
Returns the description given by the user when uploading this attachment.
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityType
-
Returns the description or null
if undefined.
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
-
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Return the term's description.
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
Return the extended description.
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ValidationPluginInfo
-
- getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Returns the vocabulary description.
- getDescription() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
Returns an optional description or empty string if undefined.
- getDesiredValue() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
- getDownloadLink() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- getDownloadLink() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
Returns the download link.
- getDownloadUrl(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getDownloadUrl() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStore
-
- getDownloadUrlForFileForDataSet(String, DataSetFileDTO) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Returns an URL from which the requested file.
- getDownloadUrlForFileForDataSet(String, String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Returns an URL from which the requested file of the specified data set can be downloaded.
- getDownloadUrlForFileForDataSetWithTimeout(String, DataSetFileDTO, long) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Returns an URL from which the requested file.
- getDownloadUrlForFileForDataSetWithTimeout(String, String, String, long) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Returns an URL from which the requested file of the specified data set can be downloaded.
- getDownloadUrlFromDataStoreUrl(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataStoreApiUrlUtilities
-
Converts a data store server URL to a URL that can be used to download files.
- getDssInternalTempDir(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getDssRecoveryStateDir(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getDssRegistrationLogDir(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getEndOfChain(Throwable) - Static method in class ch.systemsx.cisd.common.exceptions.ExceptionUtils
-
Returns the last Throwable
of a chain of throwables.
- getErrorMessage() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
-
- getExcelWorkbook(File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ExcelFileReader
-
- getExperimentIdentifier() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getExperimentIdentifier() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
Returns the identifier of experiment which makes it unique.
- getExperimentIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getExperimentIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
Returns the identifier of the Experiment to which this data set belongs.
- getExperimentIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- getExperimentIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getExperimentIdentifiers() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Returns the set of experiment identifier or an empty set if undefined.
- getExperimentRegistrations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getExperiments(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getExperiments(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return
Experiment
objects for a set of given experiment identifiers.
- getExperiments() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- getExperiments() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
-
- getExperimentTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getExperimentTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
Returns the experiment type code.
- getExperimentUpdates() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getExternalCode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getExternalData() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetRegistrationInformation
-
- getExternalDataManagementSystem() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getExternalDataManagementSystem() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getExternalDataManagementSystem() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getExternalDataManagementSystem() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getExternalDataSetCode() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getExternalDataSetCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getExternalDataSetCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getExternalDataSetLink() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getExternalDataSetLink() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getExternalDataSetLink() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getExtractableData() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getFetchOptions() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getFieldType() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
-
The field type this MatchClause matches against.
- getFile(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getFile(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
-
Get an InputStream
with contents of a file contained in this data set.
- getFile(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getFile() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
The file that contains the data set.
- getFile(String, IDatasetLocation, DataSetPathInfo) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.ContentCache
-
- getFile(String, IDatasetLocation, DataSetPathInfo) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.content.IContentCache
-
- getFile() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getFile() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines
-
- getFileContent() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getFileForDataSet(String, DataSetFileDTO) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
- getFileForDataSet(String, String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
- getFileFromSessionWorkspace(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
-
Downloads a file from the session workspace.
- getFileFromSessionWorkspace(String, File) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
-
Downloads a file from the session workspace.
- getFileFromSessionWorkspace(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
- getFileFromSessionWorkspace(String, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
- getFileFromSessionWorkspace(String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Download a file from the user's session workspace.
- getFileInfos(File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssBuilder
-
Return a list of
FileInfoDssDTO
objects corresponding to all files existing within a
certain folder.
- getFileInfos() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
- getFileInfos() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
- getFileLength() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getFileName() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- getFileName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- getFileName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
Returns the file name of this attachment.
- getFileSize() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO
-
Return the file size if this FileInfo represents a file.
- getFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getFlag() - Method in class ch.systemsx.cisd.common.exceptions.Status
-
- getFreeSpace() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
- getGeneralInformationService() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
- getHeaderCodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines
-
Returns the normalized headers.
- getHeaderCodes() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.utils.ITabularData
-
- getHeaderLabels() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines
-
Returns the headers as defined in the file.
- getHeaderLabels() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.utils.ITabularData
-
- getHeight() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.Size
-
- getHostUrl() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStore
-
- getId() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
Returns tech id of the data set.
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
Returns the experiment id.
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
-
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
-
Returns the techical database id of the project.
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns the sample id.
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Returns the vocabulary id.
- getId() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
Returns the ID of the query.
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwner
-
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
Returns the experiment identifier.
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectIdentifierId
-
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
-
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns the sample identifier;
- getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getImageInfo() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.PngWritingHelper
-
- getInputStream(String, IDatasetLocation, DataSetPathInfo) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.ContentCache
-
- getInputStream(String, IDatasetLocation, DataSetPathInfo) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.content.IContentCache
-
- getInputStream() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getInstance() - Static method in class ch.systemsx.cisd.common.api.retry.config.DefaultRetryConfiguration
-
- getInstanceCode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getInstanceUUID() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getInterfaceName() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
-
The name of this interface used for identification.
- getInterfaceName() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
-
The name of this interface used for identification.
- getIsCompleteFlag() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getKey() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- getKeyOfKeyListPropertyOrNull() - Method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPluginType
-
- getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Return the term's label.
- getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
Return the label shown in forms.
- getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
-
- getLabel() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
Returns the label of the service.
- getLabel() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- getLastModified() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getLastModified() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- getLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getLinkOrCopyOfContent(String, File, String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getLinkOrCopyOfContent(String, File, String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
-
Returns a File
, if possible, that directly references some specified content of a
data set in the data store server.
- getLinkOrCopyOfContent(String, File, String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getLinkOrCopyOfContents(String, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getLinkOrCopyOfContents(String, File) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
-
Returns a File
, if possible, that directly references the contents of a data set in
the data store server.
- getLinkOrCopyOfContents(String, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getMainDataSetPath() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- getMainDataSetPath() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
-
Returns main data set path if defined.
- getMainDataSetPattern() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- getMainDataSetPattern() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
-
Returns main data set pattern if defined.
- getMajorVersion() - Method in interface ch.systemsx.cisd.common.api.IRpcService
-
Returns the major version of the server side interface.
- getMajorVersion() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
-
The major version of the interface.
- getMatchClauses() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
-
Get a list of MatchClause objects this SearchCriteria will match against.
- getMaterialByCodes(String, List<MaterialIdentifier>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns the materials with specified identifiers (i.e.
- getMaterialCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- getMaterialCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
-
- getMaterialProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
-
- getMaterialProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- getMaterialRegistrations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getMaterials() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- getMaterials() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
-
- getMaterialTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
-
Returns the code of this material type.
- getMaterialTypeIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- getMaterialTypeIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
-
- getMaterialUpdates() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getMaximumNumberOfRetries() - Method in interface ch.systemsx.cisd.common.api.retry.config.RetryConfiguration
-
- getMaximumNumberOfRetries() - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
-
- getMessage() - Method in exception ch.systemsx.cisd.common.exceptions.NotImplementedException
-
Returns the error message for this exception.
- getMetaproject() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- getMetaproject(String, IMetaprojectId) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all entities tagged with given metaproject.
- getMetaprojectOnBehalfOfUser(String, IMetaprojectId, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all entities tagged with given metaproject for specified user.
- getMetaprojectRegistrations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- getMetaprojects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getMetaprojectsJson() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- getMetaprojectUpdates() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getMethodName() - Method in class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
-
- getMinorVersion() - Method in interface ch.systemsx.cisd.common.api.IRpcService
-
Returns the minor version of this server side interface.
- getMinorVersion() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
-
The major version of the interface.
- getMinorVersionInformationService() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getMinorVersionInformationService() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns the minor version of the general information service.
- getModificationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getModificationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getModifierEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getModifierEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getModifierFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getModifierFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getModifierLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getModifierLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getModifierUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getModifierUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getName() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
-
Returns the name of this group (section).
- getName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
-
- getName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ValidationPluginInfo
-
- getName() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
Returns the name of the query.
- getNode(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContent
-
- getOpenBisServerUrl(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getOperator() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
-
Gets the operator for combining MatchClause objects.
- getOrdinal() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
-
- getParameters() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
Returns the list of parameters to which values should be bound when executing the query.
- getParent() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getParent() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
Deprecated.
- getParentCodes() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getParentCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getParentCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
Return the parent codes.
- getParentDataSetCodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
The codes of the parent data sets for this new data set.
- getParentDataSetCodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
The codes of the parent data sets for this new data set.
- getParentDataSetCodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getParentRelativePath() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getParents() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Return the parents.
- getParents() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getParentsJson() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- getPath() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataSetFileDTO
-
The path within the data set of the file
- getPathInDataSet() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO
-
The path of this file in the data set (i.e., the root of the data set has a path of "").
- getPathInListing() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO
-
The path of this file relative to the path of the request that produced this FileInfoDss
- getPathToDataSet(String, String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Get a path to the data set.
- getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
Returns the experiment permanent id.
- getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectPermIdId
-
- getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
-
Returns the permanent id of the project.
- getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns the sample permanent id.
- getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getPluginKey(String, String, Properties) - Method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPluginType
-
- getPrefix() - Method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPluginType
-
- getPreviousTermOrdinal() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Return the position of predecessor term in the vocabulary.
- getPrimaryDataSetOrNull() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
Returns the primary data set.
- getProducerCode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getProductionDate() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getProjectRegistrations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getProjects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
-
Returns all projects of this space.
- getProjectUpdates() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
The properties for the new data set.
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getPropertiesJson() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- getPropertyCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.PropertyMatchClause
-
Return the code of the property to compare against.
- getPropertyCodeOrNull() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
-
- getPropertyTypeGroups() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityType
-
Return the grouped property types for this entity type.
- getPropertyTypeGroups() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
-
- getPropertyTypes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
-
- getPropertyTypes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
-
- getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
Return the registration details.
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
Return the data set registration details.
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
-
Return the vocabulary term registration details.
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Return the sample registration details.
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
-
Return the vocabulary term registration details.
- getRegistrationId() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getRelativePath() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- getRelativePath() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- getRetrievedConnections() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getRetrievedConnections() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getRetrievedConnections() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getRetrievedFetchOptions() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns fetch options used to retrieved this sample object.
- getRetrievedFetchOptions() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getRoles(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
-
Returns all access roles the specified user has on this space.
- getRootExceptionClassName() - Method in exception ch.systemsx.cisd.common.exceptions.MasqueradingException
-
- getRootNode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContent
-
- getRows() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.PngWritingHelper
-
- getRows() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableModel
-
Gets all rows.
- getSampleCode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getSampleIdentifier() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
Returns the sample identifier.
- getSampleIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getSampleIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- getSampleIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- getSampleProperties() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
Returns the sample properties.
- getSampleRegistrations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getSamples(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getSamples(List<String>, EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getSamples(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return
Sample
objects for a set of given sample identifiers.
- getSamples(List<String>, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return
Sample
objects for a set of given sample identifiers.
- getSamples() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- getSamples() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
-
- getSampleTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns the sample type code.
- getSampleTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getSampleTypeId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns the sample type id.
- getSampleTypeId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getSampleUpdates() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getScriptString() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
-
- getService(RpcServiceInterfaceVersionDTO, Class<T>, String, boolean) - Method in interface ch.systemsx.cisd.common.api.IRpcServiceFactory
-
Get a proxy to the RPC service interface specified by ifaceVersion
.
- getService() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getService(RpcServiceInterfaceVersionDTO, Class<T>, String, boolean) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssServiceRpcFactory
-
- getService(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.DssServiceRpcGenericFactory
-
- getService(String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.content.IDssServiceRpcGenericFactory
-
Returns the service for the specified base URL.
- getServiceKey() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
The key that identifies this particular service.
- getServletClass() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.PluginServletConfig
-
- getServletPath() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.PluginServletConfig
-
URL path at which the servlet will be deployed
- getServletProperties() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.PluginServletConfig
-
Any additional properties specified in the properties file
- getSessionToken() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
-
Returns the session token.
- getSessionToken() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
- getSessionToken() - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IWebInformationService
-
Returns the server side session token for the current HTTP session.
- getSessionToken() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
Return the session token for the logged-in user.
- getSessionURLForFile(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getSessionURLForFile(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
-
Get a URL that will return the contents of a file contained in this data set.
- getSessionURLForFile(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getSessionWorkspace(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SessionWorkspaceUtil
-
- getSettings() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.WebAppSettings
-
- getShare() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Returns the root directory of this share.
- getShareId() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
- getShareId() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getShareId() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Returns the share Id of this share.
- getShares(File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SegmentedStoreUtils
-
Lists all folders in specified store root directory which match share pattern.
- getSharesWithDataSets(File, String, boolean, Set<String>, IFreeSpaceProvider, IEncapsulatedOpenBISService, ISimpleLogger) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SegmentedStoreUtils
-
Gets a list of all shares of specified store root directory.
- getShufflePriority() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- getSimpleClassName() - Method in class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
-
- getSizeInBytes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- getSpaceCode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getSpaceCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
-
Returns the space code.
- getSpaceCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Returns the space code.
- getSpaceCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- getSpaceRegistrations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getSpaceRoleAssignments() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getSpaceRoleRevocations() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getSpacesWithProjects() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getSpacesWithProjects() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all spaces enriched with their projects and role assignments.
- getSpeed() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Returns the speed of this share.
- getSpeedHint() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getStatus() - Method in exception ch.systemsx.cisd.common.exceptions.ExceptionWithStatus
-
- getStatus() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetCodesWithStatus
-
- getStatus() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DataSetAndPathInfoDBConsistencyChecker
-
- getStoreRootDir(Properties) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- getSubCriterias() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
-
- getSubFolderName() - Method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPluginType
-
- getSupportedInterfaces(String, boolean) - Method in interface ch.systemsx.cisd.common.api.IRpcServiceFactory
-
Get the RPC service interfaces supported by the server.
- getSupportedInterfaces() - Method in interface ch.systemsx.cisd.common.api.IRpcServiceNameServer
-
Return a collection of interfaces supported by this server
- getSupportedInterfaces(String, boolean) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssServiceRpcFactory
-
- getTarget() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
-
- getTargetEntityKind() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
-
- getTechId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectTechIdId
-
- getTerms() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType
-
- getTerms() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Returns the vocabulary terms.
- getTimeZone() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.TimeAttributeMatchClause
-
Return the time zone to compare against.
- getTitle() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- getTitle() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
Returns the title given by the user when uploading this attachment.
- getTitle() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableColumn
-
Returns the title.
- getTotalSizeOfDataSets() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Returns the total size (in bytes) of all data sets.
- getType() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwner
-
- getType() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
The type of the service.
- getType() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
-
- getTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material.MaterialCodeAndTypeCodeId
-
- getUnmodifiableProperties() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
The unmodifiable property types (as strings).
- getUploadingUserIdOrNull() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- getURLForFileWithTimeout(String, long) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- getURLForFileWithTimeout(String, long) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
-
Get a URL that will return the contents of a file contained in this data set.
- getURLForFileWithTimeout(String, long) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- getUrlForRpcService(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataStoreApiUrlUtilities
-
- getUrlSuffix() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
-
The suffix added to the server's URL to produce the URL for this interface.
- getUrlTemplate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Returns a URL template (e.g a search query) that can display additional information for
concrete vocabulary terms.
- getUserEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getUserFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- getUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getUserLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
-
- getUsers() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
-
Returns the set of all users that have a role in this space.
- getValidationPluginInfo() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityType
-
- getValidationPluginInfo() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
-
- getValidationScript(String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Get the validation script for the specified data set type.
- getValue() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
-
- getVersion() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- getVersion() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
-
Returns the version of this attachment.
- getVersions() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
-
- getVocabulary() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType
-
- getVocabularyTermsMap() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getVocabularyTermsMap() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
- getVocabularyTermsMap(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
- getVocabularyUpdates() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.AtomicEntityOperationDetails
-
- getWaitingTimeBetweenRetries() - Method in interface ch.systemsx.cisd.common.api.retry.config.RetryConfiguration
-
- getWaitingTimeBetweenRetries() - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
-
- getWaitingTimeBetweenRetriesIncreasingFactor() - Method in interface ch.systemsx.cisd.common.api.retry.config.RetryConfiguration
-
- getWaitingTimeBetweenRetriesIncreasingFactor() - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
-
- getWebAppId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.WebAppSettings
-
- getWebAppSettings(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- getWebAppSettings(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
Returns the persistent settings for a given custom web app.
- getWebAppSettings(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Returns the persistent settings for a given custom web app.
- getWidth() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.Size
-
- GIF_FILE - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
- IContentCache - Interface in ch.systemsx.cisd.openbis.dss.generic.shared.content
-
Interface for cache for files remotely retrieved from Data Store Servers.
- IDataSetDss - Interface in ch.systemsx.cisd.openbis.dss.client.api.v1
-
The representation of a Data Set managed by a DSS server.
- IDataSetFilter - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
-
Interface filters of
DataSet
instances.
- IDataSetId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset
-
Holds information that uniquely identifies a data set in openBIS.
- IDssComponent - Interface in ch.systemsx.cisd.openbis.dss.client.api.v1
-
A component that manages a connection to openBIS and 1 or more data store servers.
- IDssServiceRpcGeneric - Interface in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
-
Generic functionality for interacting with the DSS.
- IDssServiceRpcGenericFactory - Interface in ch.systemsx.cisd.openbis.dss.generic.shared.content
-
- IExperimentId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment
-
Holds information that uniquely identifies an experiment in openBIS.
- IGeneralInformationChangingService - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1
-
Service for changing general informations.
- IGeneralInformationService - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1
-
Service for retrieving general informations.
- IGNORED_FOR_SHUFFLING_PROP - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ShareFactory
-
- imageToPng(BufferedImage) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Converts the given image to a PNG image.
- imageToPng(BufferedImage, PngFilterType, int) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Converts the given image to a PNG image.
- imageToPngFast(BufferedImage) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Converts the given image to a PNG image.
- ImageUtil - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Utility function on images.
- ImageUtil() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
- IMaterialId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material
-
Holds information that uniquely identifies a material in openBIS.
- IMetaprojectId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject
-
Holds information that uniquely identifies a metaproject in openBIS.
- IncompatibleAPIVersionsException - Exception in ch.systemsx.cisd.common.api
-
Exception that is thrown if the client can not talk to the server because of API version
incompatibility.
- IncompatibleAPIVersionsException(int, int) - Constructor for exception ch.systemsx.cisd.common.api.IncompatibleAPIVersionsException
-
- initializeFromTemplate(NewDataSetDTOBuilder) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
Take over any appropriate values from the template.
- INSTANCE - Static variable in class ch.systemsx.cisd.openbis.dss.client.api.v1.OpenbisServiceFacadeFactory
-
- INSTANCE - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultCsvFileReaderConfiguration
-
- InternalErr - Exception in ch.systemsx.cisd.common.exceptions
-
Exception representing internal error in the program caused by programmer error.
- InvalidAuthenticationException - Exception in ch.systemsx.cisd.common.exceptions
-
Exception to be thrown when authentication of a service at another service fails.
- InvalidAuthenticationException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidAuthenticationException
-
- InvalidAuthenticationException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidAuthenticationException
-
- InvalidExternalDataException - Exception in ch.systemsx.cisd.common.exceptions
-
Data provided to the system from another system is invalid.
- InvalidExternalDataException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidExternalDataException
-
- InvalidExternalDataException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidExternalDataException
-
- InvalidSessionException - Exception in ch.systemsx.cisd.common.exceptions
-
This UserFailureException
extension signals that a session has expired.
- InvalidSessionException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidSessionException
-
- invoke(MethodInvocation) - Method in class ch.systemsx.cisd.common.api.retry.RetryInterceptor
-
- IObjectId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id
-
Holds information that uniquely identifies an object in openBIS.
- IOpenbisServiceFacade - Interface in ch.systemsx.cisd.openbis.dss.client.api.v1
-
Provides a fully-blown API for openBIS integration.
- IOpenbisServiceFacadeFactory - Interface in ch.systemsx.cisd.openbis.dss.client.api.v1
-
- IPersistenceManager - Interface in ch.systemsx.cisd.openbis.dss.generic.shared.content
-
Manages persistence of a statefull object.
- IProjectId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project
-
Holds information that uniquely identifies a project in openBIS.
- IQueryApiFacade - Interface in ch.systemsx.cisd.openbis.plugin.query.client.api.v1
-
Facade for openBIS query service.
- IRpcService - Interface in ch.systemsx.cisd.common.api
-
The most generic interface for RPC invocations into openBIS.
- IRpcServiceFactory - Interface in ch.systemsx.cisd.common.api
-
A factory for creating proxies to RPC services on a data store server.
- IRpcServiceNameServer - Interface in ch.systemsx.cisd.common.api
-
An Interface for finding out about the IRpcService interfaces supported by a server.
- ISampleId - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
-
Holds information that uniquely identifies a sample in openBIS.
- isAutomaticCodeGeneration() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Returns true
if the sample code is created automatically.
- isAutomaticCodeGeneration() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- isChecksumCRC32Precalculated() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- isChosenFromList() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Return true
if the vocabulary was chosen from a list.
- isContainerDataSet() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- isContainerDataSet() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- isContainerDataSet() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- isContainerDataSet() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- isDataSourceDefined() - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.PathInfoDataSourceProvider
-
- isDeletionDisallowed() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- isDeletionDisallowed() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
-
Returns true
if deletion for data sets of this type are disallowed.
- isDirectory() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO
-
Return true if this FileInfo represents a folder.
- isDirectory() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContentNode
-
- isDirectory() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- isError() - Method in class ch.systemsx.cisd.common.exceptions.Status
-
- isExcelFile(File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ExcelFileReader
-
Uses file extension to figure out if given file is supported Excel file.
- isGif(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Returns true
if the fileTypeOrNull is a gif file.
- isIgnoreComments() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultCsvFileReaderConfiguration
-
- isIgnoreComments() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.ICsvFileReaderConfiguration
-
- isIgnoredForShuffling() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
Returns true
if the share should not be used by shuffling maintenance or
post-registration tasks.
- isIgnoredForShuffling() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- isImageFile(File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Returns true
if the specified file is a supported image file.
- ISimpleOpenbisServiceFacade - Interface in ch.systemsx.cisd.openbis.dss.client.api.v1
-
Provides a simplified view of an openBIS backend by allowing the following operations :
- isIncoming() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
Returns true
if the share is associated with one or more incoming directories.
- isIncoming() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
Returns true
if this is an incoming share.
- isInternalNamespace() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Returns true
if the vocabulary is in the internal openBIS namespace.
- isJpeg(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Returns true
if the fileTypeOrNull is a jpeg file.
- isLinkDataSet() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- isLinkDataSet() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- isLinkDataSet() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- isLinkDataSet() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- isLinkSample() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- isListable() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Returns true
if this is a sample type of listable samples.
- isListable() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- isManagedInternally() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Returns true
if the vocabulary is managed internally.
- isMandatory() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
-
- isMandatory() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- isNoFileDataSet() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- isNonRetriableError() - Method in class ch.systemsx.cisd.common.exceptions.Status
-
- isOfficial() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
-
- isOK() - Method in class ch.systemsx.cisd.common.exceptions.Status
-
- isPng(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Returns true
if the fileTypeOrNull is a png file.
- isPresentInArchive() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetCodesWithStatus
-
- isRecursive() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataSetFileDTO
-
If true, this object includes sub folders
- isRetriable() - Method in exception ch.systemsx.cisd.common.exceptions.EnvironmentFailureException
-
Returns the assessment of the subsystem throwing the exception whether the failure could be
temporarily and thus retrying the operation (on a higher level) could possibly help to cure
the problem.
- isRetriable() - Method in exception ch.systemsx.cisd.common.exceptions.HighLevelException
-
Returns the assessment of the subsystem throwing the exception whether the failure could be
temporarily and thus retrying the operation (on a higher level) could possibly help to cure
the problem.
- isRetriable(Throwable) - Static method in exception ch.systemsx.cisd.common.exceptions.HighLevelException
-
Returns the assessment of the subsystem throwing the exception whether the failure could be
temporarily and thus retrying the operation (on a higher level) could possibly help to cure
the problem.
- isRetriableError() - Method in class ch.systemsx.cisd.common.exceptions.Status
-
- isSessionActive(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns true if session with the specified token is still active, false otherwise.
- isShowContainer() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Returns true
if for samples of this type the container field is shown in
edit/registration form.
- isShowContainer() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- isShowParentMetaData() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Returns true
if meta data of parents of samples of this type should be shown.
- isShowParentMetaData() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- isShowParents() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Returns true
if for sample of this type the parents field is shown in
edit/registration form.
- isShowParents() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- isSkipEmptyRecords() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.DefaultCsvFileReaderConfiguration
-
- isSkipEmptyRecords() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.ICsvFileReaderConfiguration
-
- isSpaceLevel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
-
Returns true
if this role is for a particular space.
- isStorageConfirmed() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- isStorageConfirmed() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- isStub() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- isStub() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
-
- isStub() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
- isTiff(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Returns true
if the fileTypeOrNull is a tiff file.
- isUniquePluginNameRequired() - Method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPluginType
-
- isUniqueSubcodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Returns true
if the sub code of samples of this type has to be unique.
- isUniqueSubcodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- isUnmodifiableProperty(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
- isWithdrawShare() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
Returns true
if the share should be emptied by shuffling maintenance tasks.
- isWithdrawShare() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- ITabularData - Interface in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
- IWebInformationService - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1
-
Service for retrieving web information.
- listAggregationServices(String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Returns metadata for all aggregation services.
- listAggregationServices() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
List the available aggregation and ingestion services
- listAllShares(String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Lists all shares.
- listAttachmentsForExperiment(String, IExperimentId, boolean) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Lists attachments of specified experiment.
- listAttachmentsForProject(String, IProjectId, boolean) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Lists attachments of specified project.
- listAttachmentsForSample(String, ISampleId, boolean) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Lists attachments of specified sample.
- listDataSets(List<Sample>, EnumSet<DataSet.Connections>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listDataSets(List<Sample>, EnumSet<DataSet.Connections>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
Return all data sets attached to the given samples with connections.
- listDataSets(String, List<Sample>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all data sets attached to the given samples.
- listDataSets(String, List<Sample>, EnumSet<DataSet.Connections>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all data sets attached to the given samples with connections.
- listDataSetsForExperiment(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listDataSetsForExperiment(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all data sets of specified experiment.
- listDataSetsForExperiments(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listDataSetsForExperiments(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all data sets for a given list of experiments identifiers.
- listDataSetsForExperiments(String, List<Experiment>, EnumSet<DataSet.Connections>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all data sets attached to the given experiments with connections.
- listDataSetsForExperimentsOnBehalfOfUser(String, List<Experiment>, EnumSet<DataSet.Connections>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all data sets attached to the given experiments with connections that the user
userId is allowed to see.
- listDataSetsForSample(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listDataSetsForSample(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all data sets of specified sample.
- listDataSetsForSample(String, Sample, boolean) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return the data sets attached to the specified sample, optionally including child samples.
- listDataSetsForSamples(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listDataSetsForSamples(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all data sets for a given list of sample identifiers.
- listDataSetsOnBehalfOfUser(String, List<Sample>, EnumSet<DataSet.Connections>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all data sets attached to the given samples with connections that the user
userId is allowed to see.
- listDataSetTypes() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listDataSetTypes() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all data set types available in openBIS.
- listDataSetTypes(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all data set types.
- listDataStores(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Lists all DSS server registered this openBIS server instance.
- listExperiments(String, List<Project>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all experiments of the given type that belong to the supplied projects.
- listExperiments(String, List<String>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all experiments matching a specified set of identifiers.
- listExperimentsForProjects(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listExperimentsForProjects(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all experiments for a given list of project identifiers.
- listExperimentsHavingDataSets(String, List<Project>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all experiments of the given type that belong to the supplied projects and have
registered data sets.
- listExperimentsHavingDataSetsForProjects(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listExperimentsHavingDataSetsForProjects(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all experiments having data sets for a given list of project identifiers.
- listExperimentsHavingSamples(String, List<Project>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all experiments of the given type that belong to the supplied projects and have
registered samles.
- listExperimentsHavingSamplesForProjects(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listExperimentsHavingSamplesForProjects(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all experiments having samples for a given list of project identifiers.
- listExperimentTypes() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listExperimentTypes() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all experiment types available in openBIS.
- listExperimentTypes(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all experiment types.
- listFiles(String, boolean) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
-
- listFiles(String, boolean) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
-
List files contained in this data set.
- listFiles(String, boolean) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
-
- listFilesForDataSet(String, DataSetFileDTO) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Get an array of FileInfoDss objects that describe the file-system structure of the data set.
- listFilesForDataSet(String, String, String, boolean) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Get an array of FileInfoDss objects that describe the file-system structure of the data set.
- listMatchingNodes(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContent
-
- listMatchingNodes(String, String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.RemoteHierarchicalContent
-
- listMetaprojects(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Lists all metaprojects belonging to current user.
- listMetaprojectsOnBehalfOfUser(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Lists all metaprojects belonging to specified user.
- listNamedRoleSets(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all named role sets.
- listProjects() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listProjects() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all available projects.
- listProjects(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all available projects.
- listProjectsOnBehalfOfUser(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all available projects that a particular user is allowed to see.
- listQueries() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
Lists all queries the user has access rights.
- listSamplesForExperiment(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all samples that belong to the supplied experiment.
- listSamplesForExperimentAndSampleType(String, String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listSamplesForExperimentAndSampleType(String, String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all samples for specified experiment and of specified type.
- listSamplesForExperimentOnBehalfOfUser(String, String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all samples that belong to the supplied experiment that are visible to user
userId.
- listSamplesForExperiments(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listSamplesForExperiments(List<String>, EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listSamplesForExperiments(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all samples for a given list of experiments identifiers.
- listSamplesForExperiments(List<String>, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all samples for a given list of experiments identifiers.
- listSamplesForProjects(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listSamplesForProjects(List<String>, EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listSamplesForProjects(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all samples for a given list of project identifiers.
- listSamplesForProjects(List<String>, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all samples for a given list of project identifiers.
- listSamplesOfSample(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listSamplesOfSample(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all samples which are components or children of the specified sample.
- listSampleTypes() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listSampleTypes() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Returns all sample types available in openBIS.
- listSampleTypes(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all sample types.
- listSpacesWithProjectsAndRoleAssignments(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all spaces of specified database instance enriched with their projects and role
assignments.
- listTableReportDescriptions(String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Returns meta data for all reporting plugins which deliver a table.
- listTableReportDescriptions() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
Returns meta data for all reporting plugins which deliver a table.
- listVocabularies() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- listVocabularies() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Return all vocabularies available in openBIS together with the contained vocabulary terms.
- listVocabularies(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all available vocabularies together with the contained terms.
- load(Serializable) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.DelayedPersistenceManager
-
- load(Serializable) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.content.IPersistenceManager
-
Loads and returns the persistent object.
- load(Serializable) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.content.SimpleFileBasePersistenceManager
-
- loadColorDepthJavaAdvancedImagingTiff(IRandomAccessFile, ImageID) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
For experts only! Loads some kinds of TIFF images handled by JAI library.
- loadDimensionJavaAdvancedImagingTiff(IRandomAccessFile, ImageID) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
For experts only! Loads some kinds of TIFF images handled by JAI library.
- loadImageForDisplay(IHierarchicalContentNode) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Loads an image from specified file node.
- loadJavaAdvancedImagingTiff(IRandomAccessFile, ImageID) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
For experts only! Loads some kinds of TIFF images handled by JAI library.
- loadProperties(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- loadServiceProperties() - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
loads server configuration
- loadUnchangedImage(IHierarchicalContentNode, String, String, String, IReadParams) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Loads the image specified by imageIdOrNull from the given inputStream.
- loadUnchangedImageColorDepth(IHierarchicalContentNode, String, String, String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Loads the color depth of image specified by imageIdOrNull from the given
inputStream.
- loadUnchangedImageDimension(IHierarchicalContentNode, String, String, String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil
-
Loads the size of image specified by imageIdOrNull from the given
inputStream.
- logout() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
-
Logs the current user out.
- logout() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
- logout() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- logout() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Logs out from openBIS and frees all associated resources on the server.
- logout(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Logout the session with the specified session token.
- logout() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
-
Logs current user out.
- Sample - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Immutable value object representing a sample.
- Sample(Sample.SampleInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
-
Creates a new instance with the provided initializer
- Sample.SampleInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Class used to initialize a new sample instance.
- Sample.SampleInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- SampleFetchOption - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- SampleIdentifierId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
-
Identifies a sample by identifier.
- SampleIdentifierId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample.SampleIdentifierId
-
- SamplePermIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
-
Identifies a sample by perm id.
- SamplePermIdId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample.SamplePermIdId
-
- SampleTechIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
-
Identifies a sample by tech id.
- SampleTechIdId(Long) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample.SampleTechIdId
-
- SampleType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Immutable value object representing a sample type.
- SampleType(SampleType.SampleTypeInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType
-
Creates a new instance with the provided initializer
- SampleType.SampleTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Class used to initialize a new
SampleType
instance.
- SampleType.SampleTypeInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- SearchableEntityKind - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
An enum listing the different kinds of entities that are searchable.
- SearchCriteria - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A (mutable) object representing the specification of a search.
- SearchCriteria() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
-
- SearchCriteria.AnyFieldMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A MatchClause for checking that any of the properties or attributes equals a desired value.
- SearchCriteria.AnyPropertyMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A MatchClause for checking that any of the properties equals a desired value.
- SearchCriteria.AttributeMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A MatchClause for checking that an attribute equals a desired value.
- SearchCriteria.CompareMode - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- SearchCriteria.MatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A specification of one field (either property or attribute) and desired value for that field.
- SearchCriteria.MatchClauseAttribute - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
An enum listing the different attributes that can be compared against.
- SearchCriteria.MatchClauseFieldType - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
An enum listing the different field types that can be compared against.
- SearchCriteria.MatchClauseTimeAttribute - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
An enum listing the different attributes containing time values that can be compared against.
- SearchCriteria.PropertyMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A MatchClause for checking that a property equals a desired value.
- SearchCriteria.SearchOperator - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Operators for combining MatchClause objects.
- SearchCriteria.TimeAttributeMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A MatchClause for comparing a time attribute to a specified value.
- searchForDataSets(SearchCriteria) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- searchForDataSets(SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
Return all data sets matching a specified search criteria.
- searchForDataSets(String, SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all data sets matching specified search criteria.
- searchForDataSetsOnBehalfOfUser(String, SearchCriteria, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all data sets matching specified search criteria and visible to user
userId.
- searchForExperiments(SearchCriteria) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- searchForExperiments(SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
Returns all experiments matching specified search criteria.
- searchForExperiments(String, SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all experiments matching specified search criteria.
- searchForMaterials(String, SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Returns all material fulfilling specified search criteria.
- searchForSamples(SearchCriteria) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- searchForSamples(SearchCriteria, EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- searchForSamples(SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
Return all samples that match the search criteria.
- searchForSamples(SearchCriteria, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
Return all samples that match the search criteria.
- searchForSamples(String, SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all samples that match the search criteria.
- searchForSamples(String, SearchCriteria, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all samples that match the search criteria.
- searchForSamplesOnBehalfOfUser(String, SearchCriteria, EnumSet<SampleFetchOption>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Return all samples that match the search criteria and that a particular user is allowed to
see.
- SearchSubCriteria - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
A specification of criteria for a subquery about a connected entity.
- SegmentedStoreUtils - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Utility methods for segmented stores.
- SegmentedStoreUtils() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SegmentedStoreUtils
-
- SERVER_URL_KEY - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- SERVICE_NAME - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Name of this service for which it is registered at the RPC name server.
- SERVICE_NAME - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Name of this service for which it is registered at the RPC name server.
- SERVICE_NAME - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IWebInformationService
-
Name of this service for which it is registered at the RPC name server.
- SERVICE_PROPERTIES_FILE - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
Location of service properties file.
- SERVICE_URL - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Application part of the URL to access this service remotely.
- SERVICE_URL - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
-
Application part of the URL to access this service remotely.
- SESSION_WORKSPACE_ROOT_DIR_DEFAULT - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SessionWorkspaceUtil
-
- SESSION_WORKSPACE_ROOT_DIR_KEY - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SessionWorkspaceUtil
-
- SessionWorkspaceUtil - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Utility functions for session workspace.
- SessionWorkspaceUtil() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SessionWorkspaceUtil
-
- setAttachmentHolderId(IObjectId) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- setAutomaticCodeGeneration(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- setChecksumCRC32(Integer) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setChildReferences(List<Long>, Map<Long, Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setChildren(List<Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setChildrenCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setChosenFromList(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
-
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Set the term's code.
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setCodePrefix(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- setComplete(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setContainedDataSetCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setContainedDataSets(List<DataSet>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setContainerDataSet(AbstractExternalData) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setContainerDataSet(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setContainerDatasetPermId(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setContainerOrNull(DataSet) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setDataSetCode(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setDataSetKind(DataSetKind) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- setDataSetOwnerIdentifier(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
- setDataSetOwnerType(NewDataSetDTO.DataSetOwnerType) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
- setDataSetProperties(List<NewProperty>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setDataSets(List<DataSet>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- setDataSetType(DataSetType) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setDataSetTypeCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setDataSetTypeOrNull(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
- setDataSetTypeOrNull(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
- setDataSetTypes(List<String>) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- setDataStoreBaseUrl(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
- setDataStoreCode(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
- setDataStoreCode(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- setDataType(DataTypeCode) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- setDeletionDisallowed(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
-
- setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Set the term's description.
- setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setDescription(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
- setDirectory(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setDownloadLink(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- setEmail(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setExperiment(Experiment) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setExperimentIdentifier(ExperimentIdentifier) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
Sets experimentIdentifier
.
- setExperimentIdentifier(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setExperimentIdentifierOrNull(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setExperimentIdentifiers(Set<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- setExperiments(List<Experiment>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- setExperimentTypeCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- setExternalCode(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setExternalDataManagementSystem(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setExternalDataManagementSystem(ExternalDataManagementSystem) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setExternalDataSetCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setExternalDataSetLink(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setExtractableData(ExtractableData) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setFetchOptions(DataSetFetchOptions) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- setFile(File) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
-
Set the file that contains the data set.
- setFileName(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setFileName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- setFirstName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setId(long) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setId(long) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
- setIdentifier(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- setIdentifier(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setIgnoredForShuffling(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
- setIgnoredForShuffling(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- setIncoming(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
- setIncoming(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- setInstanceCode(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setInstanceUUID(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setInternalNamespace(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setIsStub(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- setKey(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- setLabel(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Set the term's label.
- setLabel(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- setLabel(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
- setLabel(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
-
- setLastModified(Date) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setLastName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setLinkDataSet(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setLinkSample(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setListable(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- setMainDataSetPath(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- setMainDataSetPattern(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
-
- setManagedInternally(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setMandatory(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
-
- setMaterialCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- setMaterialProperties(Map<String, Material>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- setMaterials(List<Material>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- setMaterialTypeIdentifier(MaterialTypeIdentifier) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- setMaximumNumberOfRetries(int) - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
-
- setMetaproject(Metaproject) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- setModificationDate(Date) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setModifierEmail(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setModifierFirstName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setModifierLastName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setModifierUserId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
-
- setName(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
- setOperator(SearchCriteria.SearchOperator) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
-
Set the operator for combining MatchClause objects.
- setParameters(List<String>) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
-
- setParent(DataSetPathInfo) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setParentCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setParentDataSetCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
Sets the parent data sets of this data set.
- setParentDataSetCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
Sets the parent data sets of this data set.
- setParentDataSetCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setParentReferences(List<Long>, Map<Long, Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setParents(List<Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setPermId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- setPermId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setPreviousTermOrdinal(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
-
Set the position of predecessor term in the vocabulary.
- setProducerCode(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setProductionDate(Date) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setProperties(Map<String, String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
-
- setProperties(Map<String, String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
- setProperties(Map<String, String>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- setRegistrationDate(Date) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
-
- setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
-
- setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setRelativePath(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setRetrievedConnections(EnumSet<DataSet.Connections>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setRetrievedFetchOptions(EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setSample(Sample) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setSampleCode(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setSampleIdentifier(SampleIdentifier) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
Sets the sample identifier.
- setSampleIdentifier(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setSampleIdentifierOrNull(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setSampleProperties(IEntityProperty[]) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setSamples(List<Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignments
-
- setSampleTypeCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setSampleTypeId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setServiceKey(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
- setShareId(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setShowContainer(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- setShowParentMetaData(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- setShowParents(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- setShufflePriority(Share.ShufflePriority) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- setSizeInBytes(long) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo
-
- setSpaceCode(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setSpaceCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setSpeedHint(int) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setStorageConfirmed(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setStorageConfirmed(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
-
- setStub(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
-
- setStub(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
-
- setTerms(List<ControlledVocabularyPropertyType.VocabularyTerm>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer
-
- setTerms(List<VocabularyTerm>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setTitle(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- setType(AggregationServiceType) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
-
- setType(QueryTableColumnDataType) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
-
- setUniqueSubcodes(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleType.SampleTypeInitializer
-
- setUnmodifiableProperties(Set<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
- setUnmodifiableProperties(Map<String, String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
-
- setUploadingUserEmail(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setUploadingUserId(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation
-
- setUrlTemplate(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- setUserId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
-
- setValidationPluginInfo(ValidationPluginInfo) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
-
- setValue(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
-
- setVersion(int) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
-
- setVocabulary(Vocabulary) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer
-
- setWaitingTimeBetweenRetries(int) - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
-
- setWaitingTimeBetweenRetriesIncreasingFactor(float) - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
-
- setWebAppSettings(WebAppSettings) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- setWebAppSettings(WebAppSettings) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
-
Sets the persistent settings for a given custom web app.
- setWebAppSettings(String, WebAppSettings) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
-
Sets the persistent settings for a given custom web app.
- setWithdrawShare(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
- setWithdrawShare(boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- Share - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Represents a share of a segmented store.
- Share(File, int, IFreeSpaceProvider) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- Share(SharesHolder, File, int, IFreeSpaceProvider) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share
-
- Share.ShufflePriority - Enum in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
different factors that have priority when moving a data set to the share.
- SHARE_PROPS_FILE - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ShareFactory
-
- ShareFactory - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
A factory that constructs
Share
objects.
- ShareFactory() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.ShareFactory
-
- ShareInfo - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
-
Information about a share.
- ShareInfo(String, long) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.ShareInfo
-
- shuffleDataSet(String, String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
-
Moves specified data set to specified share.
- SimpleFileBasePersistenceManager - Class in ch.systemsx.cisd.openbis.dss.generic.shared.content
-
- SimpleFileBasePersistenceManager(File, String) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.content.SimpleFileBasePersistenceManager
-
Creates an instance for the specified file storing the object.
- Size - Class in ch.systemsx.cisd.openbis.dss.generic.shared.dto
-
- Size(int, int) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.dto.Size
-
- SpaceWithProjectsAndRoleAssignments - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Bean which represents a space, all its projects, and all its relevant role assignments
- SpaceWithProjectsAndRoleAssignments(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
-
Creates a new instance for the specified code.
- SpeedUtils - Class in ch.systemsx.cisd.openbis.dss.generic.shared.utils
-
Utility method for speed.
- SpeedUtils() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.utils.SpeedUtils
-
- StaticRetryConfiguration - Class in ch.systemsx.cisd.common.api.retry.config
-
- StaticRetryConfiguration() - Constructor for class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
-
- Status - Class in ch.systemsx.cisd.common.exceptions
-
A class that holds the information about the status of an operation.
- StatusFlag - Enum in ch.systemsx.cisd.common.exceptions
-
The status of an operation.
- StatusWithResult<T> - Class in ch.systemsx.cisd.common.exceptions
-
A
Status
that can also hold a result.
- STOREROOT_DIR_KEY - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPropertyParametersUtil
-
- SystemExitException - Exception in ch.systemsx.cisd.common.exceptions
-
Thrown by SystemExit
instead of plain RuntimeException
- SystemExitException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.SystemExitException
-
- validate(File) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner.NullValidationScriptRunner
-
- validate(File) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
-
- validateDataSet(NewDataSetDTO, File) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
-
Validate a data set.
- validateDataSet(NewDataSetDTO, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
-
- validateDataSet(NewDataSetDTO, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
-
- validateDataSet(NewDataSetDTO, File) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
-
Validates a data set.
- ValidationError - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
-
- ValidationError.ValidationErrorTarget - Enum in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
-
- ValidationPluginInfo - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Value object with name and optional description of a validation plugin.
- ValidationPluginInfo(String, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ValidationPluginInfo
-
- ValidationScriptReader - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
-
A helper class that reads validation scripts.
- ValidationScriptReader() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptReader
-
- ValidationScriptRunner - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
-
- ValidationScriptRunner.NullValidationScriptRunner - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
-
- ValidationScriptRunner.NullValidationScriptRunner() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner.NullValidationScriptRunner
-
- valueOf(String) - Static method in enum ch.systemsx.cisd.common.exceptions.StatusFlag
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwnerType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError.ValidationErrorTarget
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPluginType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share.ShufflePriority
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.Connections
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOption
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleFetchOption
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchableEntityKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.CompareMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseAttribute
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseFieldType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseTimeAttribute
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.SearchOperator
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableColumnDataType
-
Returns the enum constant of this type with the specified name.
- values() - Static method in enum ch.systemsx.cisd.common.exceptions.StatusFlag
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwnerType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError.ValidationErrorTarget
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.DssPluginType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.utils.Share.ShufflePriority
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.Connections
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOption
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleFetchOption
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchableEntityKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.CompareMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseAttribute
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseFieldType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseTimeAttribute
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.SearchOperator
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableColumnDataType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- Vocabulary - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
Immutable value object representing an openBIS vocabulary.
- Vocabulary(Vocabulary.VocabularyInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
-
Creates a new instance with the provided initializer
- Vocabulary.VocabularyInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- Vocabulary.VocabularyInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
-
- VocabularyTerm - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
-
- VocabularyTerm(String, String, Long, Boolean, EntityRegistrationDetails) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
-