task proteomicsApiJar(type: Jar) {
	baseName 'openBIS-proteomics-API'
	includeEmptyDirs false
	from project(':common').compileJava.outputs.getFiles().getAsFileTree().plus(
         project(':openbis-common').compileJava.outputs.getFiles().getAsFileTree().plus( 
         project(':openbis').compileJava.outputs.getFiles().getAsFileTree().plus(
         project(':openbis_api').compileJava.outputs.getFiles().getAsFileTree().plus(
         project(':rtd_phosphonetx').compileJava.outputs.getFiles().getAsFileTree() )))).matching {
         	include "ch/systemsx/cisd/common/exceptions/**/*.class"
        	include "ch/systemsx/cisd/common/spring/HttpInvokerUtils.class"
        	include "ch/systemsx/cisd/common/api/**/*.class"
        	exclude "ch/systemsx/cisd/common/api/server/**/*.class"
        	include "ch/systemsx/cisd/openbis/common/api/**/*.class"
        	exclude "ch/systemsx/cisd/openbis/common/api/server/**/*.class"
        	include "ch/systemsx/cisd/openbis/plugin/proteomics/**/api/**/*.class"
        	exclude "ch/systemsx/cisd/openbis/**/server/api/**/*.class"
        	include "ch/systemsx/cisd/openbis/generic/shared/api/**/*.class" 
        	include "ch/systemsx/cisd/openbis/plugin/proteomics/*BuildAndEnvironmentInfo.class"
        	include "*.INFO"
		}
}

task proteomicsApiSources(type: Zip) {
	archiveName 'sources-proteomics-api.zip'
	from project(':common').files('source/java').getAsFileTree().plus(
         project(':openbis-common').files('source/java').getAsFileTree().plus( 
         project(':openbis').files('source/java').getAsFileTree().plus(
         project(':openbis_api').files('source/java').getAsFileTree().plus(
         project(':rtd_phosphonetx').files('source/java').getAsFileTree())))).matching {
         	include "ch/systemsx/cisd/common/exceptions/**/*.java"
        	include "ch/systemsx/cisd/common/spring/HttpInvokerUtils.java"
        	include "ch/systemsx/cisd/common/api/**/*.java"
        	exclude "ch/systemsx/cisd/common/api/server/**/*.java"
        	include "ch/systemsx/cisd/openbis/common/api/**/*.java"
        	exclude "ch/systemsx/cisd/openbis/common/api/server/**/*.java"
        	include "ch/systemsx/cisd/openbis/plugin/proteomics/**/api/**/*.java"
        	exclude "ch/systemsx/cisd/openbis/**/server/api/**/*.java"
        	include "ch/systemsx/cisd/openbis/generic/shared/api/**/*.java" 
        	include "ch/systemsx/cisd/openbis/plugin/proteomics/*BuildAndEnvironmentInfo.java"
		}
}

configurations.create('proteomicsApiJavadoc')
dependencies {
	proteomicsApiJavadoc project(':rtd_phosphonetx')						 
}

task proteomicsApiJavaDoc(type: Javadoc) {
	source proteomicsApiSources.inputs.getFiles().getAsFileTree().matching {
		include "**/*.java"
	}
	classpath = configurations.proteomicsApiJavadoc
}

task proteomicsApiJavaDocZip(type: Zip, dependsOn: proteomicsApiJavaDoc) {
	archiveName 'javadoc-proteomics-api.zip'
	from proteomicsApiJavaDoc.destinationDir
}


configurations.create('proteomicsApiDependencies')
dependencies {
	proteomicsApiDependencies 'cisd:cisd-base:r31435',
								'apache:commons-httpclient:3.1',
								'apache:log4j:1.2.15',
								'springframework:spring:2.5.6.SEC03',
								'apache:commons-logging:1.1.1',								
								'marathon:marathon-spring-util:1.2.3'
}

task proteomicsApiZip(type: Zip) {
	baseName 'openBIS-proteomics-API'
	from proteomicsApiJar.archivePath
	from proteomicsApiSources.archivePath
	from proteomicsApiJavaDocZip.archivePath
	from configurations.proteomicsApiDependencies
	into 'openBIS-proteomics-API'
}
proteomicsApiZip.dependsOn proteomicsApiJar
proteomicsApiZip.dependsOn proteomicsApiSources
proteomicsApiZip.dependsOn proteomicsApiJavaDocZip