To create a patched version of bioformats cherry pick those commits.

Cellomics dropbox speedup:
commit ff038535ff26f1c94c0f67b69229f212edf963b0
commit 79bb2ff65a6088a3ece3efb16b45f283998c5edf
SOB-122:
commit 54c71f3e17e01112567e1fe726508390af010e04

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Commit information
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commit ff038535ff26f1c94c0f67b69229f212edf963b0
Author: Roger Leigh <r.leigh@dundee.ac.uk>
Date:   Tue May 7 10:28:25 2013 +0100

    CellomicsReader: Improve performance of initFile

    Move checking for hidden files to inside the loop over the file list.
    This avoids creating a Location object for each file twice: inside
    the loop and in Location.list().

commit 79bb2ff65a6088a3ece3efb16b45f283998c5edf
Author: Jakub Straszewski <jakub.straszewski@bsse.ethz.ch>
Date:   Wed Sep 4 11:39:28 2013 +0200

    Improve performance of Location constructor, by avoiding exception throwing whe

    components/common/src/loci/common/Location.java

commit 54c71f3e17e01112567e1fe726508390af010e04
Author: Melissa Linkert <melissa@glencoesoftware.com>
Date:   Tue Mar 19 14:45:00 2013 -0400

    LZW: prevent reading beyond the end of the stream

        Fixes #10525.
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