A C D E F G H I J L M N O P Q R S T U V W

A

add(Project) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
 
add(String, Role) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
 
addAdHocVocabularyTerm(TechId, String, String, String, Long) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
addAdHocVocabularyTerm(Long, NewVocabularyTerm) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
addAdHocVocabularyTerm(TechId, String, String, String, Long) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
Deprecated. Please use the IOpenbisServiceFacade.addAdHocVocabularyTerm(Long, NewVocabularyTerm) method instead.
addAdHocVocabularyTerm(Long, NewVocabularyTerm) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
Adds new ad-hoc terms to a vocabulary starting from specified ordinal + 1.
addMatchClause(SearchCriteria.MatchClause) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
Add a new match clause.
addPropertyType(PropertyType) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
 
addPropertyTypeGroup(PropertyTypeGroup) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
 
addRow(Serializable[]) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableModel
Adds a row of values.
addSubCriteria(SearchSubCriteria) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
Add a new sub search criteria.
addUnofficialVocabularyTerm(String, TechId, String, String, String, Long) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Deprecated. Because the parameters refer to an internal openBIS class (TechID).
addUnofficialVocabularyTerm(String, Long, NewVocabularyTerm) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Adds new unofficial terms to a vocabulary starting from specified ordinal + 1.
addVersion(RpcServiceInterfaceVersionDTO) - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
 
AggregationServiceDescription - Class in ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto
Bean with information about aggregation services that provide data.
AggregationServiceDescription() - Constructor for class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
 
AggregationServiceType - Enum in ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto
The different kinds of aggregation services.
AndDataSetFilter - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
Combining filters by logical AND.
AndDataSetFilter(IDataSetFilter...) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.AndDataSetFilter
 
appendFileInfos(ArrayList<FileInfoDssDTO>, boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.HierarchicalFileInfoDssBuilder
Append file info starting from the listing root node.
appendFileInfosForFile(File, ArrayList<FileInfoDssDTO>, boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssBuilder
Append file info for the requested file or file hierarchy.
asNewDataSetDTO() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
Convert the builder into a NewDataSetDTO object.
AuthorizationFailureException - Exception in ch.systemsx.cisd.common.exceptions
A UserFailureException for authorization failure.
AuthorizationFailureException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.AuthorizationFailureException
 

C

callWithRetry() - Method in class ch.systemsx.cisd.common.api.retry.RetryCaller
 
ch.systemsx.cisd.common.api - package ch.systemsx.cisd.common.api
 
ch.systemsx.cisd.common.api.client - package ch.systemsx.cisd.common.api.client
 
ch.systemsx.cisd.common.api.retry - package ch.systemsx.cisd.common.api.retry
 
ch.systemsx.cisd.common.api.retry.config - package ch.systemsx.cisd.common.api.retry.config
 
ch.systemsx.cisd.common.exceptions - package ch.systemsx.cisd.common.exceptions
 
ch.systemsx.cisd.openbis.dss.client.api.v1 - package ch.systemsx.cisd.openbis.dss.client.api.v1
 
ch.systemsx.cisd.openbis.dss.client.api.v1.impl - package ch.systemsx.cisd.openbis.dss.client.api.v1.impl
 
ch.systemsx.cisd.openbis.dss.generic.shared.api.v1 - package ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
 
ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation - package ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
 
ch.systemsx.cisd.openbis.generic.shared.api.v1 - package ch.systemsx.cisd.openbis.generic.shared.api.v1
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.filter - package ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
 
ch.systemsx.cisd.openbis.plugin.query.client.api.v1 - package ch.systemsx.cisd.openbis.plugin.query.client.api.v1
API Facade
ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto - package ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto
Data Transfer Objects
checkSession() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
Checks whether the session is alive.
checkSession() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
 
checkSession() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
checkSession() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Checks whether the session is alive.
COMPOUND - Static variable in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
Material identifier for a compound.
ConfigurationFailureException - Exception in ch.systemsx.cisd.common.exceptions
The ConfigurationFailureException is the super class of all exceptions that have their cause in an inappropriate configuration of the system.
ConfigurationFailureException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.ConfigurationFailureException
 
ConfigurationFailureException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.ConfigurationFailureException
 
ControlledVocabularyPropertyType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
ControlledVocabularyPropertyType(ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType
 
ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer
 
ControlledVocabularyPropertyType.VocabularyTerm - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
ControlledVocabularyPropertyType.VocabularyTerm(String, String, Long, Boolean, EntityRegistrationDetails) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.VocabularyTerm
 
convertPatternListToString(List<String>) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetTypeFilter
Takes a List of patterns and serializes them to a single string that this class can later reread.
create(T) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
Creates a new result with status StatusFlag.OK and resultOrNull.
create(String, String, String) - Static method in class ch.systemsx.cisd.openbis.plugin.query.client.api.v1.FacadeFactory
Creates a facade for specified server URL, user Id, and password.
create(String, String) - Static method in class ch.systemsx.cisd.openbis.plugin.query.client.api.v1.FacadeFactory
Creates a facade for specified url and sessionToken.
createAttributeMatch(SearchCriteria.MatchClauseAttribute, String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Factory method to create a MatchClause matching against a specific attribute.
createDataSetChildCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createDataSetContainerCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createDataSetParentCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createDataSetTypeValidationError(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
 
createError(boolean) - Static method in class ch.systemsx.cisd.common.exceptions.Status
Create an error.
createError(boolean, String) - Static method in class ch.systemsx.cisd.common.exceptions.Status
 
createError() - Static method in class ch.systemsx.cisd.common.exceptions.Status
 
createError(String) - Static method in class ch.systemsx.cisd.common.exceptions.Status
 
createError(String, Object...) - Static method in class ch.systemsx.cisd.common.exceptions.Status
 
createError(boolean) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
Create an error.
createError(boolean, String) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
createError() - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
createError(String) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
createExperimentCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createFileValidationError(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
 
createOwnerValidationError(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
 
createPropertyMatch(String, String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Factory method to create a MatchClause matching against a specific property.
createPropertyValidationError(String, String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
 
createProxy(T) - Static method in class ch.systemsx.cisd.common.api.retry.RetryProxyFactory
 
createReportFromAggregationService(AggregationServiceDescription, Map<String, Object>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
Creates for the specified data sets and specified report description a report.
createReportFromDataSets(ReportDescription, List<String>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
Creates for the specified data sets and specified report description a report.
createRetriableError() - Static method in class ch.systemsx.cisd.common.exceptions.Status
 
createRetriableError(String) - Static method in class ch.systemsx.cisd.common.exceptions.Status
 
createRetriableError(String, Object...) - Static method in class ch.systemsx.cisd.common.exceptions.Status
 
createRetriableError() - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
createRetriableError(String) - Static method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
createSampleChildCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createSampleContainerCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createSampleCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createSampleParentCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createService(Class<S>, String) - Method in class ch.systemsx.cisd.common.api.client.ServiceFinder
Creates a remote service implementing specified interface for specified server URL.
createService(Class<S>, String, long) - Method in class ch.systemsx.cisd.common.api.client.ServiceFinder
Creates a remote service implementing specified interface for specified server URL.
createService(Class<S>, String, IServicePinger<S>) - Method in class ch.systemsx.cisd.common.api.client.ServiceFinder
Creates a remote service implementing specified interface for specified server URL by using specified pinger for checking server connection.
createService(Class<S>, String, IServicePinger<S>, long) - Method in class ch.systemsx.cisd.common.api.client.ServiceFinder
Creates a remote service implementing specified interface for specified server URL by using specified pinger for checking server connection.
createTimeAttributeMatch(SearchCriteria.MatchClauseTimeAttribute, SearchCriteria.CompareMode, String, String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Factory method to create a MatchClause matching against registration or modification date.
createValidatorFromScriptPaths(String[]) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
Factory method for creating a ValidationScriptRunner given a path to a script.
createValidatorFromScriptPaths(String[], boolean) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
Factory method for creating a ValidationScriptRunner given a path to a script.
createValidatorFromScriptString(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
Factory method for creating a ValidationScriptRunner given the script as a string.
createValidatorFromScriptString(String, boolean) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
Factory method for creating a ValidationScriptRunner given the script as a string.

D

DataSet - Class in ch.systemsx.cisd.openbis.dss.client.api.v1
A class that provides uniform access to data set metadata (from the openBIS AS) and data (from the openBIS DSS).
DataSet(IOpenbisServiceFacade, IDssComponent, DataSet, IDataSetDss) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
Constructor.
DataSet - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing a data set.
DataSet(DataSet.DataSetInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
Creates a new instance with the provided initializer
DataSet.Connections - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
DataSet.DataSetInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new data set instance.
DataSet.DataSetInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
DataSetDss - Class in ch.systemsx.cisd.openbis.dss.client.api.v1.impl
 
DataSetDss(String, IDssServiceRpcGeneric, AuthenticatedState) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
 
DataSetFetchOption - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
DataSetFetchOptions - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
DataSetFetchOptions() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOptions
 
DataSetFetchOptions(DataSetFetchOption...) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOptions
 
DataSetFileDTO - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
Represents a reference to a file/folder within a data set.
DataSetFileDTO(String, String, boolean) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataSetFileDTO
 
DataSetType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing a data set type.
DataSetType(DataSetType.DataSetTypeInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
Creates a new instance with the provided initializer
DataSetType.DataSetTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new data set instance.
DataSetType.DataSetTypeInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
 
DataSetTypeFilter - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A class that filters out data set types based on a whitelist or blacklist.
DataSetTypeFilter(String, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetTypeFilter
Constructor
DataStoreApiUrlUtilities - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
 
DEFAULT_DATA_SET_FOLDER_NAME - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
 
DefaultRetryConfiguration - Class in ch.systemsx.cisd.common.api.retry.config
 
didFinish() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.FileInfoDssDownloader.FileInfoDssDownloaderListener
 
downloadFiles() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.FileInfoDssDownloader
 
DSS_SERVICE_NAME - Static variable in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
 
DssComponent - Class in ch.systemsx.cisd.openbis.dss.client.api.v1.impl
Implementation of the IDssComponent interface.
DssComponent(IGeneralInformationService, IRpcServiceFactory, String) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
Constructor for clients that already have an IETLLIMSService; also used for testing.
DssComponentFactory - Class in ch.systemsx.cisd.openbis.dss.client.api.v1
A class that creates DssComponents.
DssComponentFactory() - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.DssComponentFactory
 
DssServiceRpcFactory - Class in ch.systemsx.cisd.openbis.dss.client.api.v1.impl
Client-side factory for DssServiceRpc objects.
DssServiceRpcFactory() - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssServiceRpcFactory
 
DssServiceRpcFactory(long) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssServiceRpcFactory
 

E

EntityRegistrationDetails - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A class that encapsulates the details about entity registration.
EntityRegistrationDetails(EntityRegistrationDetails.EntityRegistrationDetailsInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
EntityRegistrationDetails.EntityRegistrationDetailsInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize an EntityRegistrationDetails object.
EntityRegistrationDetails.EntityRegistrationDetailsInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
EnvironmentFailureException - Exception in ch.systemsx.cisd.common.exceptions
The EnvironmentFailureException is the super class of all exceptions that have their cause in the software or hardware environment of the system failing.
EnvironmentFailureException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.EnvironmentFailureException
 
EnvironmentFailureException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.EnvironmentFailureException
 
equals(Object) - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
 
equals(Object) - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
 
equals(Object) - Method in class ch.systemsx.cisd.common.exceptions.Status
 
equals(Object) - Method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.TimeAttributeMatchClause
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
Returns true if and only if the specified object is of type QueryDescription and has the same ID as this.
error() - Static method in exception ch.systemsx.cisd.common.exceptions.InternalErr
 
error(String) - Static method in exception ch.systemsx.cisd.common.exceptions.InternalErr
 
error(Object) - Static method in exception ch.systemsx.cisd.common.exceptions.InternalErr
 
escape(String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Returns a String where those characters that Lucene expects to be escaped are escaped by a preceding \.
ExceptionWithStatus - Exception in ch.systemsx.cisd.common.exceptions
 
ExceptionWithStatus(Status) - Constructor for exception ch.systemsx.cisd.common.exceptions.ExceptionWithStatus
 
ExceptionWithStatus(Status, Exception) - Constructor for exception ch.systemsx.cisd.common.exceptions.ExceptionWithStatus
 
executeQuery(long, Map<String, String>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
Executes specified query by using specified parameter bindings.
Experiment - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing an experiment.
Experiment(Experiment.ExperimentInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
Creates a new instance with the provided initializer
Experiment.ExperimentInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new experiment instance.
Experiment.ExperimentInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
extractMetadata(NewDataSetDTO, File) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
Tries to extract the data set property key-values (metadata) from the data.
extractMetadata(NewDataSetDTO, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
 
extractMetadata(NewDataSetDTO, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
extractMetadata(NewDataSetDTO, File) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Extracts metadata from a file.
extractMetadata(File) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
 
extractMetadata(File) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner.NullValidationScriptRunner
 

F

FacadeFactory - Class in ch.systemsx.cisd.openbis.plugin.query.client.api.v1
Factory of IQueryApiFacade.
FacadeFactory() - Constructor for class ch.systemsx.cisd.openbis.plugin.query.client.api.v1.FacadeFactory
 
FileExistsException - Exception in ch.systemsx.cisd.common.exceptions
An exception indicating that an output file already exists.
FileExistsException(File) - Constructor for exception ch.systemsx.cisd.common.exceptions.FileExistsException
 
FileInfoDssBuilder - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
Helper Class for creating FileInfoDss objects based on file system.
FileInfoDssBuilder(String, String) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssBuilder
Constructor for FileInfoDssFactory
FileInfoDssDownloader - Class in ch.systemsx.cisd.openbis.dss.client.api.v1
Utility class for downloading an array of file infos.
FileInfoDssDownloader(IDataSetDss, FileInfoDssDTO[], File) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.FileInfoDssDownloader
 
FileInfoDssDownloader(IDataSetDss, FileInfoDssDTO[], File, FileInfoDssDownloader.FileInfoDssDownloaderListener) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.FileInfoDssDownloader
 
FileInfoDssDownloader.FileInfoDssDownloaderListener - Interface in ch.systemsx.cisd.openbis.dss.client.api.v1
Interface for listeners to events from the downloader.
FileInfoDssDTO - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
Represents information about a file stored in DSS.
FileInfoDssDTO(String, String, boolean, long) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO
 
filterDataSetTypes(List<DataSetType>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetTypeFilter
 
fromTemplate(String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.ConfigurationFailureException
Creates an ConfigurationFailureException using a Formatter.
fromTemplate(Throwable, String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.ConfigurationFailureException
Creates an ConfigurationFailureException using a Formatter.
fromTemplate(String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.EnvironmentFailureException
Creates an EnvironmentFailureException using a Formatter.
fromTemplate(Throwable, String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.EnvironmentFailureException
Creates an EnvironmentFailureException using a Formatter.
fromTemplate(String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.InvalidExternalDataException
Creates an InvalidExternalDataException using a Formatter.
fromTemplate(Throwable, String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.InvalidExternalDataException
Creates an InvalidExternalDataException using a Formatter.
fromTemplate(String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.RetriableEnvironmentFailureException
Creates a RetriableEnvironmentFailureException using a Formatter.
fromTemplate(Throwable, String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.RetriableEnvironmentFailureException
Creates a RetriableEnvironmentFailureException using a Formatter.
fromTemplate(String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.UserFailureException
Creates an UserFailureException using a Formatter.
fromTemplate(Throwable, String, Object...) - Static method in exception ch.systemsx.cisd.common.exceptions.UserFailureException
Creates an UserFailureException using a Formatter.

G

GENE - Static variable in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
Material identifier for a gene.
getAttribute() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.AttributeMatchClause
Return the code of the attribute to compare against.
getAttribute() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.TimeAttributeMatchClause
Return the code of the attribute to compare against.
getAugmentedCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
 
getChildren() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Return the children.
getChildren() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getChildrenCodes() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
getChildrenCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getChildrenCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
Return the children codes.
getChildrenJson() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
getClassName() - Method in class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
 
getCode() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
getCode() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
The code of this data set.
getCode() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
 
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
Returns the sample code;
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
 
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
Returns the data set code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
Returns the experiment code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Return the term's code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
Returns the project code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
Return the code of this property type.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
Returns role code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns the sample code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
Returns the space code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Returns the vocabulary code.
getCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 
getColumns() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableModel
Returns columns as specified in the constructor.
getCompareMode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
 
getContainedDataSets() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
getContainedDataSets() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getContainedDataSets() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getCriteria() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
getDataSet(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
Get a proxy to the data set designated by the given data set code.
getDataSet(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
 
getDataSet(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
getDataSet(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return a DataSet object for for the given code.
getDataSetCode() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataSetFileDTO
The code of the data set that owns this file
getDataSetDss() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
Internal accessor, made public for testing, but clients should not need it.
getDataSetDss(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
getDataSetFolderName() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
The name of the folder containing the files in the data set.
getDataSetMetadata() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
The metadata data for the data set, including type and properties.
getDataSetMetaData(String, List<String>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns meta data for all specified data sets.
getDataSetMetaData(String, List<String>, EnumSet<DataSetFetchOption>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns meta data for all specified data sets.
getDataSetOwner() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
The direct owner of the data set, either an experiment or a sample.
getDataSetOwner() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
The owner may be null during construction but is non-null in a well-formed object.
getDataSetOwnerIdentifier() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
The owner identifier may be and empty during construction but is non-null in a well-formed object.
getDataSetOwnerType() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
The owner type should never be null.
getDataSets(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
getDataSets(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return DataSet objects for given a set of codes.
getDataSetTypeCode() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
getDataSetTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getDataSetTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getDataSetTypes() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
 
getDataStoreCode() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
The code of the data store the provides this service.
getDataStoreCode() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
 
getDataStoreUrlFromDownloadUrl(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataStoreApiUrlUtilities
Converts the download url to a server url.
getDataType() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
getDataType() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
getDataType() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableColumn
Returns the data type.
getDefaultPutDataStoreBaseURL(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns the URL for the default data store server for this openBIS AS.
getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Return the term's description.
getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
Return the extended description.
getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
getDescription() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Returns the vocabulary description.
getDescription() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
Returns an optional description or empty string if undefined.
getDesiredValue() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
 
getDownloadUrlForFileForDataSet(String, DataSetFileDTO) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
Returns an URL from which the requested file.
getDownloadUrlForFileForDataSet(String, String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
Returns an URL from which the requested file of the specified data set can be downloaded.
getEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getErrorMessage() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
 
getExperimentIdentifier() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
getExperimentIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getExperimentIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
Returns the identifier of the Experiment to which this data set belongs.
getExperimentIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
getExperimentIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getExperiments(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
getExperiments(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return Experiment objects for a set of given experiment identifiers.
getExperimentTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
getExperimentTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
Returns the experiment type code.
getFetchOptions() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getFieldType() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
The field type this MatchClause matches against.
getFile(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
getFile(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
Get an InputStream with contents of a file contained in this data set.
getFile(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
 
getFile() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
The file that contains the data set.
getFileForDataSet(String, DataSetFileDTO) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
Deprecated. use IDssServiceRpcGeneric.getDownloadUrlForFileForDataSet(String, DataSetFileDTO).
getFileForDataSet(String, String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
Deprecated. use IDssServiceRpcGeneric.getDownloadUrlForFileForDataSet(String, String, String).
getFileInfos(File) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssBuilder
Return a list of FileInfoDssDTO objects corresponding to all files existing within a certain folder.
getFileInfos() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
FileInfoDssDTO objects describing the files within the data set.
getFileInfos() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
 
getFileSize() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO
Return the file size if this FileInfo represents a file.
getFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getFlag() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
getGeneralInformationService() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
Returns a remote access to the IGeneralInformationService.
getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
Returns the experiment id.
getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns the sample id.
getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Returns the vocabulary id.
getId() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
Returns the ID of the query.
getIdentifier() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwner
 
getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
Returns the experiment identifier.
getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
 
getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns the sample identifier;
getIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getInstance() - Static method in class ch.systemsx.cisd.common.api.retry.config.DefaultRetryConfiguration
 
getInterfaceName() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
The name of this interface used for identification.
getInterfaceName() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
The name of this interface used for identification.
getKey() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
 
getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Return the term's label.
getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
Return the label shown in forms.
getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
getLabel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 
getLabel() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
 
getLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getLinkOrCopyOfContent(String, File, String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
getLinkOrCopyOfContent(String, File, String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
Returns a File, if possible, that directly references some specified content of a data set in the data store server.
getLinkOrCopyOfContent(String, File, String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
 
getLinkOrCopyOfContents(String, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
getLinkOrCopyOfContents(String, File) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
Returns a File, if possible, that directly references the contents of a data set in the data store server.
getLinkOrCopyOfContents(String, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
 
getMajorVersion() - Method in interface ch.systemsx.cisd.common.api.IRpcService
Returns the major version of the server side interface.
getMajorVersion() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
The major version of the interface.
getMatchClauses() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
Get a list of MatchClause objects this SearchCriteria will match against.
getMaterialByCodes(String, List<MaterialIdentifier>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns the materials with specified identifiers (i.e.
getMaterialCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
getMaterialCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
 
getMaterialProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
 
getMaterialProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
getMaterialTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
Returns the code of this material type.
getMaterialTypeIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
getMaterialTypeIdentifier() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
 
getMaximumNumberOfRetries() - Method in interface ch.systemsx.cisd.common.api.retry.config.RetryConfiguration
 
getMaximumNumberOfRetries() - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
 
getMessage() - Method in exception ch.systemsx.cisd.common.exceptions.NotImplementedException
Returns the error message for this exception.
getMethodName() - Method in class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
 
getMinorVersion() - Method in interface ch.systemsx.cisd.common.api.IRpcService
Returns the minor version of this server side interface.
getMinorVersion() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
The major version of the interface.
getModificationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getModificationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getModifierEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getModifierEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getModifierFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getModifierFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getModifierLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getModifierLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getModifierUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getModifierUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
Returns the name of this group (section).
getName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
 
getName() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
Returns the name of the query.
getOperator() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
Gets the operator for combining MatchClause objects.
getOrdinal() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 
getParameters() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
Returns the list of parameters to which values should be bound when executing the query.
getParent() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
 
getParentCodes() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
getParentCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getParentCodes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
Return the parent codes.
getParentDataSetCodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
The codes of the parent data sets for this new data set.
getParentDataSetCodes() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
The codes of the parent data sets for this new data set.
getParents() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Return the parents.
getParents() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getParentsJson() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
getPath() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataSetFileDTO
The path within the data set of the file
getPathInDataSet() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO
The path of this file in the data set (i.e., the root of the data set has a path of "").
getPathInListing() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO
The path of this file relative to the path of the request that produced this FileInfoDss
getPathToDataSet(String, String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
Get a path to the data set.
getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
Returns the experiment permanent id.
getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns the sample permanent id.
getPermId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getPreviousTermOrdinal() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Return the position of predecessor term in the vocabulary.
getPrimaryDataSetOrNull() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
Returns the primary data set.
getProjects() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
Returns all projects of this space.
getProperties() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
getProperties() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
 
getProperties() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
The properties for the new data set.
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
 
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
 
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
getProperties() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getPropertiesJson() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
getPropertyCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.PropertyMatchClause
Return the code of the property to compare against.
getPropertyCodeOrNull() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
 
getPropertyTypeGroups() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
 
getPropertyTypeGroups() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
Return the grouped property types for this data set type.
getPropertyTypes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
 
getPropertyTypes() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
 
getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getRegistrationDate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
Return the data set registration details.
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
 
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
 
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
Return the vocabulary term registration details.
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Return the sample registration details.
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getRegistrationDetails() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
Return the vocabulary term registration details.
getRetrievedConnections() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
getRetrievedConnections() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getRetrievedConnections() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getRetrievedFetchOptions() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns fetch options used to retrieved this sample object.
getRetrievedFetchOptions() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getRoles(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
Returns all access roles the specified user has on this space.
getRootExceptionClassName() - Method in exception ch.systemsx.cisd.common.exceptions.MasqueradingException
 
getRows() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableModel
Gets all rows.
getSampleIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
getSampleIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
getSampleIdentifierOrNull() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
getSamples(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
getSamples(List<String>, EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
getSamples(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return Sample objects for a set of given sample identifiers.
getSamples(List<String>, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return Sample objects for a set of given sample identifiers.
getSampleTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns the sample type code.
getSampleTypeCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getSampleTypeId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns the sample type id.
getSampleTypeId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getScriptString() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
 
getService(RpcServiceInterfaceVersionDTO, Class<T>, String, boolean) - Method in interface ch.systemsx.cisd.common.api.IRpcServiceFactory
Get a proxy to the RPC service interface specified by ifaceVersion.
getService() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
 
getService(RpcServiceInterfaceVersionDTO, Class<T>, String, boolean) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssServiceRpcFactory
 
getServiceKey() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
The key that identifies this particular service.
getSessionToken() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
Returns the session token.
getSessionToken() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
 
getSessionToken() - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IWebInformationService
Returns the server side session token for the current HTTP session.
getSessionToken() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
Return the session token for the logged-in user.
getSimpleClassName() - Method in class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
 
getSpaceCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
Returns the space code.
getSpaceCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Returns the space code.
getSpaceCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
getSpacesWithProjects() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
getSpacesWithProjects() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return all spaces enriched with their projects and role assignments.
getStatus() - Method in exception ch.systemsx.cisd.common.exceptions.ExceptionWithStatus
 
getSubCriterias() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
Get a list of SearchSubCriteria objects for this SearchCriteria.
getSupportedInterfaces(String, boolean) - Method in interface ch.systemsx.cisd.common.api.IRpcServiceFactory
Get the RPC service interfaces supported by the server.
getSupportedInterfaces() - Method in interface ch.systemsx.cisd.common.api.IRpcServiceNameServer
Return a collection of interfaces supported by this server
getSupportedInterfaces(String, boolean) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssServiceRpcFactory
 
getTarget() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
 
getTargetEntityKind() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
getTerms() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType
 
getTerms() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Returns the vocabulary terms.
getTimeZone() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.TimeAttributeMatchClause
Return the time zone to compare against.
getTitle() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableColumn
Returns the title.
getType() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwner
 
getType() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
The type of the service.
getType() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
 
getUnmodifiableProperties() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
The unmodifiable property types (as strings).
getUrlForRpcService(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataStoreApiUrlUtilities
 
getUrlSuffix() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
The suffix added to the server's URL to produce the URL for this interface.
getUrlTemplate() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Returns a URL template (e.g a search query) that can display additional information for concrete vocabulary terms.
getUserEmail() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getUserFirstName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
getUserId() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getUserLastName() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
getUsers() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
Returns the set of all users that have a role in this space.
getValidationScript(String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
Get the validation script for the specified data set type.
getValue() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
 
getVersions() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
 
getVocabulary() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType
 
getVocabularyTermsMap() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
getVocabularyTermsMap() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
Deprecated. Please use the ISimpleOpenbisServiceFacade.listVocabularies() method instead.
getVocabularyTermsMap(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Deprecated. Please use IGeneralInformationService.listVocabularies(String) instead.
getWaitingTimeBetweenRetries() - Method in interface ch.systemsx.cisd.common.api.retry.config.RetryConfiguration
 
getWaitingTimeBetweenRetries() - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
 
getWaitingTimeBetweenRetriesIncreasingFactor() - Method in interface ch.systemsx.cisd.common.api.retry.config.RetryConfiguration
 
getWaitingTimeBetweenRetriesIncreasingFactor() - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
 

H

hashCode() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
 
hashCode() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
 
hashCode() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
hashCode() - Method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
hashCode() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.TimeAttributeMatchClause
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
 
hashCode() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 
hashCode() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
Returns the ID.
HierarchicalFileInfoDssBuilder - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
Helper Class for creating FileInfoDss objects based on file system abstraction.
HierarchicalFileInfoDssBuilder(IHierarchicalContentNode) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.HierarchicalFileInfoDssBuilder
Constructor for FileInfoDssFactory
HighLevelException - Exception in ch.systemsx.cisd.common.exceptions
An exception that is "high-level" in the sense that we have a pretty good understanding what the failure means in the context where the exception has been thrown.

I

IDataSetDss - Interface in ch.systemsx.cisd.openbis.dss.client.api.v1
The representation of a Data Set managed by a DSS server.
IDataSetFilter - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
Interface filters of DataSet instances.
IDssComponent - Interface in ch.systemsx.cisd.openbis.dss.client.api.v1
A component that manages a connection to openBIS and 1 or more data store servers.
IDssServiceRpcGeneric - Interface in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
Generic functionality for interacting with the DSS.
IGeneralInformationChangingService - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1
Service for changing general informations.
IGeneralInformationService - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1
Service for retrieving general informations.
IncompatibleAPIVersionsException - Exception in ch.systemsx.cisd.common.api
Exception that is thrown if the client can not talk to the server because of API version incompatibility.
IncompatibleAPIVersionsException(int, int) - Constructor for exception ch.systemsx.cisd.common.api.IncompatibleAPIVersionsException
 
initializeFromTemplate(NewDataSetDTOBuilder) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
Take over any appropriate values from the template.
InternalErr - Exception in ch.systemsx.cisd.common.exceptions
Exception representing internal error in the program caused by programmer error.
InvalidAuthenticationException - Exception in ch.systemsx.cisd.common.exceptions
Exception to be thrown when authentication of a service at another service fails.
InvalidAuthenticationException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidAuthenticationException
 
InvalidAuthenticationException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidAuthenticationException
 
InvalidExternalDataException - Exception in ch.systemsx.cisd.common.exceptions
Data provided to the system from another system is invalid.
InvalidExternalDataException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidExternalDataException
 
InvalidExternalDataException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidExternalDataException
 
InvalidSessionException - Exception in ch.systemsx.cisd.common.exceptions
This UserFailureException extension signals that a session has expired.
InvalidSessionException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.InvalidSessionException
 
invoke(MethodInvocation) - Method in class ch.systemsx.cisd.common.api.retry.RetryInterceptor
 
IOpenbisServiceFacade - Interface in ch.systemsx.cisd.openbis.dss.client.api.v1
Provides a fully-blown API for openBIS integration.
IQueryApiFacade - Interface in ch.systemsx.cisd.openbis.plugin.query.client.api.v1
Facade for openBIS query service.
IRpcService - Interface in ch.systemsx.cisd.common.api
The most generic interface for RPC invocations into openBIS.
IRpcServiceFactory - Interface in ch.systemsx.cisd.common.api
A factory for creating proxies to RPC services on a data store server.
IRpcServiceNameServer - Interface in ch.systemsx.cisd.common.api
An Interface for finding out about the IRpcService interfaces supported by a server.
isChosenFromList() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Return true if the vocabulary was chosen from a list.
isContainerDataSet() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
isContainerDataSet() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
isContainerDataSet() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
isDirectory() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO
Return true if this FileInfo represents a folder.
isError() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
IServicePinger<S> - Interface in ch.systemsx.cisd.common.api.client
Interface of classes which know how to ping a specified remote service.
ISimpleOpenbisServiceFacade - Interface in ch.systemsx.cisd.openbis.dss.client.api.v1
Provides a simplified view of an openBIS backend by allowing the following operations :
isInternalNamespace() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Returns true if the vocabulary is in the internal openBIS namespace.
isManagedInternally() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Returns true if the vocabulary is managed internally.
isMandatory() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
isMandatory() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
isNonRetriableError() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
isOfficial() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 
isOK() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
isRecursive() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataSetFileDTO
If true, this object includes sub folders
isRetriable() - Method in exception ch.systemsx.cisd.common.exceptions.EnvironmentFailureException
Returns the assessment of the subsystem throwing the exception whether the failure could be temporarily and thus retrying the operation (on a higher level) could possibly help to cure the problem.
isRetriable() - Method in exception ch.systemsx.cisd.common.exceptions.RetriableEnvironmentFailureException
Returns true to indicate that retrying the operation might help.
isRetriableError() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
isSessionActive(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns true if session with the specified token is still active, false otherwise.
isSpaceLevel() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
Returns true if this role is for a particular space.
isUnmodifiableProperty(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
 
IWebInformationService - Interface in ch.systemsx.cisd.openbis.generic.shared.api.v1
Service for retrieving web information.

J

JSON_SERVICE_URL - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
URL where the service is exposed via JSON interface.
JSON_SERVICE_URL - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
 
JSON_SERVICE_URL - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IWebInformationService
Application part of the URL to access this service remotely.

L

listAggregationServices() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
List the available aggregation services
listDataSets(List<Sample>, EnumSet<DataSet.Connections>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
listDataSets(List<Sample>, EnumSet<DataSet.Connections>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
Return all data sets attached to the given samples with connections.
listDataSets(String, List<Sample>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all data sets attached to the given samples.
listDataSets(String, List<Sample>, EnumSet<DataSet.Connections>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all data sets attached to the given samples with connections.
listDataSetsForExperiments(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
listDataSetsForExperiments(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return all data sets for a given list of experiments identifiers.
listDataSetsForExperiments(String, List<Experiment>, EnumSet<DataSet.Connections>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all data sets attached to the given experiments with connections.
listDataSetsForSample(String, Sample, boolean) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return the data sets attached to the specified sample, optionally including child samples.
listDataSetsForSamples(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
listDataSetsForSamples(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return all data sets for a given list of sample identifiers.
listDataSetTypes() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
listDataSetTypes() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Returns all data set types available in openBIS.
listDataSetTypes(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns the URL for the default data store server for this openBIS AS.
listExperiments(String, List<Project>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all experiments of the given type that belong to the supplied projects.
listExperiments(String, List<String>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all experiments matching a specified set of identifiers.
listExperimentsForProjects(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
listExperimentsForProjects(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return all experiments for a given list of project identifiers.
listExperimentsHavingDataSets(String, List<Project>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all experiments of the given type that belong to the supplied projects and have registered data sets.
listExperimentsHavingDataSetsForProjects(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
listExperimentsHavingDataSetsForProjects(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return all experiments having data sets for a given list of project identifiers.
listExperimentsHavingSamples(String, List<Project>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all experiments of the given type that belong to the supplied projects and have registered samles.
listExperimentsHavingSamplesForProjects(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
listExperimentsHavingSamplesForProjects(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return all experiments having samples for a given list of project identifiers.
listFiles(String, boolean) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
listFiles(String, boolean) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
List files contained in this data set.
listFiles(String, boolean) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
 
listFilesForDataSet(String, DataSetFileDTO) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
Get an array of FileInfoDss objects that describe the file-system structure of the data set.
listFilesForDataSet(String, String, String, boolean) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
Get an array of FileInfoDss objects that describe the file-system structure of the data set.
listNamedRoleSets(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all named role sets.
listProjects() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
listProjects() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Returns all available projects.
listProjects(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all available projects.
listQueries() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
Lists all queries the user has access rights.
listSamplesForExperiment(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all samples that belong to the supplied experiment.
listSamplesForExperiments(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
listSamplesForExperiments(List<String>, EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
listSamplesForExperiments(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return all samples for a given list of experiments identifiers.
listSamplesForExperiments(List<String>, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return all samples for a given list of experiments identifiers.
listSamplesForProjects(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
listSamplesForProjects(List<String>, EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
listSamplesForProjects(List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return all samples for a given list of project identifiers.
listSamplesForProjects(List<String>, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return all samples for a given list of project identifiers.
listSpacesWithProjectsAndRoleAssignments(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all spaces of specified database instance enriched with their projects and role assignments.
listTableReportDescriptions() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
Returns meta data for all reporting plugins which deliver a table.
listVocabularies() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
listVocabularies() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Return all vocabularies available in openBIS together with the contained vocabulary terms.
listVocabularies(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all available vocabularies together with the contained terms.
logout() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
Logs the current user out.
logout() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
 
logout() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
logout() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Logs out from openBIS and frees all associated resources on the server.
logout(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Logout the session with the specified session token.
logout() - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
Logs current user out.

M

main(String[]) - Static method in class ch.systemsx.cisd.openbis.plugin.query.client.api.v1.QueryApiTest
 
MasqueradingException - Exception in ch.systemsx.cisd.common.exceptions
A RuntimeException extension which almost clones given rootException without saving it as cause.
MasqueradingException(Exception, String) - Constructor for exception ch.systemsx.cisd.common.exceptions.MasqueradingException
 
MasqueradingException(Exception) - Constructor for exception ch.systemsx.cisd.common.exceptions.MasqueradingException
 
Material - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
Material(Material.MaterialInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material
 
Material.MaterialInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
Material.MaterialInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
MaterialIdentifier - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
MaterialIdentifier(MaterialTypeIdentifier, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
 
MaterialTypeIdentifier - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
duplicated from ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.MaterialTypeIdentifier
MaterialTypeIdentifier(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
 
MinimalMinorVersion - Annotation Type in ch.systemsx.cisd.common.api
The minimal minor version that a service needs to have in order to possess this method.

N

NewDataSetDTO - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
Represents a new data set that the DSS should register.
NewDataSetDTO(NewDataSetDTO.DataSetOwner, File) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
Constructor
NewDataSetDTO(NewDataSetDTO.DataSetOwner, String, List<FileInfoDssDTO>) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
Constructor
NewDataSetDTO(String, NewDataSetDTO.DataSetOwner, String, List<FileInfoDssDTO>) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
Constructor
NewDataSetDTO(NewDataSetMetadataDTO, NewDataSetDTO.DataSetOwner, String, List<FileInfoDssDTO>) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
Constructor
NewDataSetDTO.DataSetOwner - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
The identifier of the owner of the new data set.
NewDataSetDTO.DataSetOwner(NewDataSetDTO.DataSetOwnerType, String) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwner
 
NewDataSetDTO.DataSetOwnerType - Enum in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
The different types of owners of data sets; there are two: experiment and sample.
NewDataSetDTOBuilder - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
A mutable object for building NewDataSetDTO objects.
NewDataSetDTOBuilder() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
 
NewDataSetMetadataDTO - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
Represents optional metadata (data set type and properties) of a new data set that the DSS should register.
NewDataSetMetadataDTO(String, Map<String, String>) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
 
NewDataSetMetadataDTO(String, Map<String, String>, List<String>) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
 
NewDataSetMetadataDTO() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
 
NewVocabularyTerm - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A value object representing a new vocabulary term to be created by the openBIS backend.
NewVocabularyTerm() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
 
NotImplementedException - Exception in ch.systemsx.cisd.common.exceptions
This is an extension to the RuntimeException for unimplemented methods.
NotImplementedException() - Constructor for exception ch.systemsx.cisd.common.exceptions.NotImplementedException
 
NotImplementedException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.NotImplementedException
 
NotImplementedException(Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.NotImplementedException
 
NotImplementedException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.NotImplementedException
 
NotImplementedException.StackTraceExtractor - Class in ch.systemsx.cisd.common.exceptions
An automatic stack trace extractor.
NotImplementedException.StackTraceExtractor(Throwable) - Constructor for class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
 
NotImplementedException.StackTraceExtractor(Throwable, int) - Constructor for class ch.systemsx.cisd.common.exceptions.NotImplementedException.StackTraceExtractor
 

O

OK - Static variable in class ch.systemsx.cisd.common.exceptions.Status
The status indicating that the operation went fine.
OLIGO - Static variable in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
Material identifier for an siRNA-nucleotide
OpenbisServiceFacade - Class in ch.systemsx.cisd.openbis.dss.client.api.v1.impl
Default implementation for IOpenbisServiceFacade.
OpenbisServiceFacade(String, IGeneralInformationService, IGeneralInformationChangingService, IDssComponent) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
ctor.
OpenbisServiceFacadeFactory - Class in ch.systemsx.cisd.openbis.dss.client.api.v1
A factory creating IOpenbisServiceFacade instances.
OpenbisServiceFacadeFactory() - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.OpenbisServiceFacadeFactory
 

P

pass(DataSet) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.AndDataSetFilter
 
pass(DataSet) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.IDataSetFilter
Returns true if the specified data set passes the filter.
pass(DataSet) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.PropertiesBasedDataSetFilter
 
pass(DataSet) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.TypeBasedDataSetFilter
Return true if the data set type code of the specified data set matches the regular expression provided as constructor argument.
ping(S) - Method in interface ch.systemsx.cisd.common.api.client.IServicePinger
Pings specified service.
PREFFERED_BEAN_NAME - Static variable in interface ch.systemsx.cisd.common.api.IRpcServiceNameServer
The preferred name of the bean in Spring
PREFFERED_SERVICE_NAME - Static variable in interface ch.systemsx.cisd.common.api.IRpcServiceNameServer
The preferred name of the bean in Spring
PREFFERED_URL_SUFFIX - Static variable in interface ch.systemsx.cisd.common.api.IRpcServiceNameServer
The preferred suffix of the url of the name server service
Project - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing a project.
Project(String, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
Creates a new instance for the specified space code and project code.
Project(String, String, EntityRegistrationDetails) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
Creates a new instance for the specified space code and project code.
PropertiesBasedDataSetFilter - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
Filter based on data set properties.
PropertiesBasedDataSetFilter(Map<String, String>) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.PropertiesBasedDataSetFilter
 
PropertyType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing a property type.
PropertyType(PropertyType.PropertyTypeInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
Creates a new instance with the provided initializer
PropertyType.PropertyTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new data set instance.
PropertyType.PropertyTypeInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
PropertyTypeGroup - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing a data set type.
PropertyTypeGroup(PropertyTypeGroup.PropertyTypeGroupInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
Creates a new instance with the provided initializer
PropertyTypeGroup.PropertyTypeGroupInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new data set instance.
PropertyTypeGroup.PropertyTypeGroupInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
 
putDataSet(NewDataSetDTO, File) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
Upload a new data set to the DSS.
putDataSet(NewDataSetDTO, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
 
putDataSet(NewDataSetDTO, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
putDataSet(NewDataSetDTO, File) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Upload a new data set to the DSS.
putDataSet(String, NewDataSetDTO, InputStream) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
Upload a new data set to the DSS.
putProperty(String, String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
putProperty(String, String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
putProperty(String, String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 

Q

QueryApiTest - Class in ch.systemsx.cisd.openbis.plugin.query.client.api.v1
Example of usage of Query API.
QueryApiTest() - Constructor for class ch.systemsx.cisd.openbis.plugin.query.client.api.v1.QueryApiTest
 
QueryDescription - Class in ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto
Description of a query.
QueryDescription() - Constructor for class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
 
QueryTableColumn - Class in ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto
Column of query data.
QueryTableColumn(String, QueryTableColumnDataType) - Constructor for class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableColumn
Creates an instance for specified title and data type.
QueryTableColumnDataType - Enum in ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto
Data types of QueryTableModel.
QueryTableModel - Class in ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto
Model of query data.
QueryTableModel(List<QueryTableColumn>) - Constructor for class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableModel
Creates an instance for the specified columns.

R

ReportDescription - Class in ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto
Bean with basic meta data of a service offered by a Data Store Server.
ReportDescription() - Constructor for class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
 
reset() - Method in class ch.systemsx.cisd.common.api.retry.config.DefaultRetryConfiguration
 
RetriableEnvironmentFailureException - Exception in ch.systemsx.cisd.common.exceptions
The RetriableEnvironmentFailureException is the super class of all exceptions that have their cause in the software or hardware environment of the system failing and where, at least in principle, retrying the operation could help.
RetriableEnvironmentFailureException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.RetriableEnvironmentFailureException
 
RetriableEnvironmentFailureException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.RetriableEnvironmentFailureException
 
Retry - Annotation Type in ch.systemsx.cisd.common.api.retry
 
RetryCaller<T,E extends java.lang.Throwable> - Class in ch.systemsx.cisd.common.api.retry
 
RetryCaller() - Constructor for class ch.systemsx.cisd.common.api.retry.RetryCaller
 
RetryCaller(RetryConfiguration) - Constructor for class ch.systemsx.cisd.common.api.retry.RetryCaller
 
RetryConfiguration - Interface in ch.systemsx.cisd.common.api.retry.config
 
RetryInterceptor - Class in ch.systemsx.cisd.common.api.retry
 
RetryInterceptor() - Constructor for class ch.systemsx.cisd.common.api.retry.RetryInterceptor
 
RetryProxy - Interface in ch.systemsx.cisd.common.api.retry
 
RetryProxyFactory - Class in ch.systemsx.cisd.common.api.retry
 
RetryProxyFactory() - Constructor for class ch.systemsx.cisd.common.api.retry.RetryProxyFactory
 
Role - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing an authorization role.
Role(String, boolean) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
Creates a new instance from specified code and space level flag.
RpcServiceInterfaceDTO - Class in ch.systemsx.cisd.common.api
Describes an RPC interface supported by the server.
RpcServiceInterfaceDTO(String) - Constructor for class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
 
RpcServiceInterfaceVersionDTO - Class in ch.systemsx.cisd.common.api
Describes an RPC interface supported by the server.
RpcServiceInterfaceVersionDTO(String, String, int, int) - Constructor for class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
 

S

Sample - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing a sample.
Sample(Sample.SampleInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
Creates a new instance with the provided initializer
Sample.SampleInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new sample instance.
Sample.SampleInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
SampleFetchOption - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Fetch options for IGeneralInformationService.searchForSamples(String, SearchCriteria, java.util.EnumSet).
SearchableEntityKind - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
An enum listing the different kinds of entities that are searchable.
SearchCriteria - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A (mutable) object representing the specification of a search.
SearchCriteria() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
 
SearchCriteria.AttributeMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A MatchClause for checking that an attribute equals a desired value.
SearchCriteria.CompareMode - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
SearchCriteria.MatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A specification of one field (either property or attribute) and desired value for that field.
SearchCriteria.MatchClauseAttribute - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
An enum listing the different attributes that can be compared against.
SearchCriteria.MatchClauseFieldType - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
An enum listing the different field types that can be compared against.
SearchCriteria.MatchClauseTimeAttribute - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
An enum listing the different attributes containing time values that can be compared against.
SearchCriteria.PropertyMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A MatchClause for checking that a property equals a desired value.
SearchCriteria.SearchOperator - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Operators for combining MatchClause objects.
SearchCriteria.TimeAttributeMatchClause - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A MatchClause for comparing a time attribute to a specified value.
searchForDataSets(SearchCriteria) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
searchForDataSets(SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
Return all data sets matching a specified search criteria.
searchForDataSets(String, SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all data sets matching a specified search criteria.
searchForMaterials(String, SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns all material fulfilling specified search criteria.
searchForSamples(SearchCriteria) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
searchForSamples(SearchCriteria, EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
searchForSamples(SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
Return all samples that match the search criteria.
searchForSamples(SearchCriteria, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
Return all samples that match the search criteria.
searchForSamples(String, SearchCriteria) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all samples that match the search criteria.
searchForSamples(String, SearchCriteria, EnumSet<SampleFetchOption>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Return all samples that match the search criteria.
SearchSubCriteria - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A specification of criteria for a subquery about a connected entity.
SERVICE_NAME - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Name of this service for which it is registered at the RPC name server.
SERVICE_NAME - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Name of this service for which it is registered at the RPC name server.
SERVICE_NAME - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IWebInformationService
Name of this service for which it is registered at the RPC name server.
SERVICE_URL - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Application part of the URL to access this service remotely.
SERVICE_URL - Static variable in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Application part of the URL to access this service remotely.
ServiceFinder - Class in ch.systemsx.cisd.common.api.client
Helper to find a remote service exported by Spring's HttpInvoker.
ServiceFinder(String, String) - Constructor for class ch.systemsx.cisd.common.api.client.ServiceFinder
Creates an instance for specified application name and URL service suffix.
setChildReferences(List<Long>, Map<Long, Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setChildren(List<Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setChildrenCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setChosenFromList(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
 
setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Set the term's code.
setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setContainedDataSets(List<DataSet>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setContainedDataSets(List<DataSet>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
setContainerDataSet(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setContainerDataSet(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
setDataSetOwnerIdentifier(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
 
setDataSetOwnerType(NewDataSetDTO.DataSetOwnerType) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
 
setDataSetTypeCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setDataSetTypeOrNull(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
 
setDataSetTypeOrNull(String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
 
setDataSetTypes(List<String>) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
 
setDataStoreCode(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
 
setDataStoreCode(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
 
setDataType(DataTypeCode) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Set the term's description.
setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
setDescription(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setDescription(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
 
setEmail(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setExperimentIdentifier(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setExperimentIdentifierOrNull(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setExperimentTypeCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
setFetchOptions(DataSetFetchOptions) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
setFile(File) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
Set the file that contains the data set.
setFirstName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setId(long) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
 
setIdentifier(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
setIdentifier(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setInternalNamespace(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setKey(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
 
setLabel(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Set the term's label.
setLabel(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
setLabel(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
 
setLastName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setManagedInternally(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setMandatory(boolean) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType.PropertyTypeInitializer
 
setMaterialCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
setMaterialProperties(Map<String, Material>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
setMaterialTypeIdentifier(MaterialTypeIdentifier) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
setMaximumNumberOfRetries(int) - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
 
setModificationDate(Date) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setModifierEmail(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setModifierFirstName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setModifierLastName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setModifierUserId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setName(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
 
setName(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
 
setOperator(SearchCriteria.SearchOperator) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
Set the operator for combining MatchClause objects.
setParameters(List<String>) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
 
setParentCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setParentDataSetCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
Sets the parent data sets of this data set.
setParentDataSetCodes(List<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
Sets the parent data sets of this data set.
setParentReferences(List<Long>, Map<Long, Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setParents(List<Sample>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setPermId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
setPermId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setPreviousTermOrdinal(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
Set the position of predecessor term in the vocabulary.
setProperties(Map<String, String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
 
setProperties(Map<String, String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
 
setProperties(Map<String, String>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
setRegistrationDate(Date) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
setRegistrationDetails(EntityRegistrationDetails) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setRetrievedConnections(EnumSet<DataSet.Connections>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setRetrievedFetchOptions(EnumSet<SampleFetchOption>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setSampleIdentifierOrNull(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
setSampleTypeCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setSampleTypeId(Long) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setServiceKey(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
 
setSpaceCode(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
setTerms(List<ControlledVocabularyPropertyType.VocabularyTerm>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer
 
setTerms(List<VocabularyTerm>) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setType(AggregationServiceType) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
 
setType(QueryTableColumnDataType) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
 
setUnmodifiableProperties(Set<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
 
setUnmodifiableProperties(Map<String, String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
 
setUrlTemplate(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
setUserId(String) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
setValue(String) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
 
setVocabulary(Vocabulary) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer
 
setWaitingTimeBetweenRetries(int) - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
 
setWaitingTimeBetweenRetriesIncreasingFactor(float) - Method in class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
 
SpaceWithProjectsAndRoleAssignments - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Bean which represents a space, all its projects, and all its relevant role assignments
SpaceWithProjectsAndRoleAssignments(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
Creates a new instance for the specified code.
StaticRetryConfiguration - Class in ch.systemsx.cisd.common.api.retry.config
 
StaticRetryConfiguration() - Constructor for class ch.systemsx.cisd.common.api.retry.config.StaticRetryConfiguration
 
Status - Class in ch.systemsx.cisd.common.exceptions
A class that holds the information about the status of an operation.
StatusFlag - Enum in ch.systemsx.cisd.common.exceptions
The status of an operation.
StatusWithResult<T> - Class in ch.systemsx.cisd.common.exceptions
A Status that can also hold a result.
SystemExitException - Exception in ch.systemsx.cisd.common.exceptions
Thrown by SystemExit instead of plain RuntimeException
SystemExitException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.SystemExitException
 

T

toSerializable() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
 
toString() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
 
toString() - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
 
toString() - Method in exception ch.systemsx.cisd.common.exceptions.MasqueradingException
 
toString() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
toString() - Method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
 
toString() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
toString() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
 
toString() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataSetFileDTO
 
toString() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO
 
toString() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwner
 
toString() - Method in enum ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwnerType
 
toString() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
 
toString() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
 
toString() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.NewVocabularyTerm
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.AndDataSetFilter
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.PropertiesBasedDataSetFilter
 
toString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.TypeBasedDataSetFilter
 
toString() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
 
toString() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
Returns the name.
toString() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.ReportDescription
Returns the label.
toString() - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
 
translate(RoleWithHierarchy) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
 
translate(RoleWithHierarchy.RoleCode, boolean) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
 
translate(Project) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
 
translate(Sample) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
 
translate(Experiment) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
 
translate(DataSetType, HashMap<Vocabulary, List<ControlledVocabularyPropertyType.VocabularyTerm>>) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
 
translate(Collection<VocabularyTerm>) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
 
translate(Iterable<ExternalData>, EnumSet<DataSet.Connections>) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
Translates specified iterable collection of ExternalData into a list of DataSet instance.
translate(ExternalData, EnumSet<DataSet.Connections>) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
Translates the specified ExternalData instance into a DataSet instance.
translate(Vocabulary) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
 
translate(Material, Map<Long, Material>) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
 
translateExperiments(Collection<Experiment>) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
 
translateMaterials(Collection<Material>) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
 
translateProjects(List<Project>) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
 
translatePropertyTypeTerms(Collection<VocabularyTerm>) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
 
translateSamples(Collection<Sample>) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.Translator
 
Translator - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1
 
tryCreate(String, String, String, long) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DssComponentFactory
Public factory method for creating an IDssComponent with a username and password.
tryCreate(String, String, long) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DssComponentFactory
Public factory method for creating an IDssComponent for a user that has already been authenticated.
tryCreate(String, String, String) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DssComponentFactory
See DssComponentFactory.tryCreate(String, String, String, long).
tryCreate(String, String) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DssComponentFactory
See DssComponentFactory.tryCreate(String, String, long).
tryCreate(String, String, String, long) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
Public factory method for creating a DssComponent with a username and password.
tryCreate(String, String, long) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
Public factory method for creating a DssComponent for a user that has already been authenticated.
tryCreate(String, String, String, long) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
tryCreate(String, String, long) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
tryCreate(String, String, String, long) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.v1.OpenbisServiceFacadeFactory
Creates an OpenbisServiceFacade instance that can be used to interact with an openBIS backend.
tryCreate(String, String, long) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.v1.OpenbisServiceFacadeFactory
Creates an OpenbisServiceFacade instance that can be used to interact with an openBIS backend.
tryDataSetType() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
 
tryDataSetType() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetMetadataDTO
The code for the type of the new data set.
tryGetDataStoreBaseURL(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns the download URL for the data store of specified data set or null if such data set does not exist.
tryGetErrorMessage() - Method in class ch.systemsx.cisd.common.exceptions.Status
 
tryGetResult() - Method in class ch.systemsx.cisd.common.exceptions.StatusWithResult
Returns the result of the operation (may be null).
tryLinkToContents(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
tryLinkToContents(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss
Returns a File, if possible, that directly references the contents of a data set in the data store server.
tryLinkToContents(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
 
tryReadValidationScript(String[]) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptReader
Reads and appends a collection of Jython validation files into a single interpretable script.
tryToAuthenticateForAllServices(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Tries to authenticate specified user with specified password.
TypeBasedDataSetFilter - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
Filter which will be passed only by data sets with a data set type code matching a certain regular expression.
TypeBasedDataSetFilter(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.TypeBasedDataSetFilter
Creates an instance for the specified regular expression.
TypedStringValue - Class in ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto
A bean that stores a primitive value as a string with a type.
TypedStringValue() - Constructor for class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
 
TypedStringValue(QueryTableColumnDataType, String) - Constructor for class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.TypedStringValue
 

U

UnknownLastChangedException - Exception in ch.systemsx.cisd.common.exceptions
Used to signal the error of getting last modification time of a store item
UnknownLastChangedException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.UnknownLastChangedException
 
updateSampleProperties(String, long, Map<String, String>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
 
UserFailureException - Exception in ch.systemsx.cisd.common.exceptions
The UserFailureException is the super class of all exceptions that have their cause in an inappropriate usage of the system.
UserFailureException(String) - Constructor for exception ch.systemsx.cisd.common.exceptions.UserFailureException
 
UserFailureException(String, Throwable) - Constructor for exception ch.systemsx.cisd.common.exceptions.UserFailureException
 

V

validate(File) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner.NullValidationScriptRunner
 
validate(File) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
 
validateDataSet(NewDataSetDTO, File) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
Validate a data set.
validateDataSet(NewDataSetDTO, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
 
validateDataSet(NewDataSetDTO, File) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
validateDataSet(NewDataSetDTO, File) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Validates a data set.
ValidationError - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
 
ValidationError.ValidationErrorTarget - Enum in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
 
ValidationScriptReader - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
A helper class that reads validation scripts.
ValidationScriptReader() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptReader
 
ValidationScriptRunner - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
 
ValidationScriptRunner.NullValidationScriptRunner - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
 
ValidationScriptRunner.NullValidationScriptRunner() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner.NullValidationScriptRunner
 
valueOf(String) - Static method in enum ch.systemsx.cisd.common.exceptions.StatusFlag
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwnerType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError.ValidationErrorTarget
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.Connections
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOption
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleFetchOption
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchableEntityKind
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.CompareMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseAttribute
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseFieldType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseTimeAttribute
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.SearchOperator
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableColumnDataType
Returns the enum constant of this type with the specified name.
values() - Static method in enum ch.systemsx.cisd.common.exceptions.StatusFlag
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwnerType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError.ValidationErrorTarget
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.Connections
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOption
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SampleFetchOption
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchableEntityKind
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.CompareMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseAttribute
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseFieldType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseTimeAttribute
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.SearchOperator
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableColumnDataType
Returns an array containing the constants of this enum type, in the order they are declared.
Vocabulary - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing an openBIS vocabulary.
Vocabulary(Vocabulary.VocabularyInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
Creates a new instance with the provided initializer
Vocabulary.VocabularyInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
Vocabulary.VocabularyInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary.VocabularyInitializer
 
VocabularyTerm - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
VocabularyTerm(String, String, Long, Boolean, EntityRegistrationDetails) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 

W

willCreateDirectory(FileInfoDssDTO) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.FileInfoDssDownloader.FileInfoDssDownloaderListener
 
willDownload(FileInfoDssDTO) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.FileInfoDssDownloader.FileInfoDssDownloaderListener
 

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