# Config file for Illumina Sample Sheet Creation 

[GENERAL]
facilityName = Quantitative Genomics Facility
facilityNameShort = QGF
facilityInstitution = ETHZ_D-BSSE
mailList = mail@ethz.ch
mailFrom = SampleSheetCreator@ethz.ch
smptHost =  smtphost.ethz.ch
separator = ,
indexSeparator = -

[OPENBIS]
openbisServer = http://<openbis-server>:<port>
openbisUserName = <username>
openbisPassword = <password> 
connectionTimeout = 5000
illuminaFlowCellTypeName = ILLUMINA_FLOW_CELL
index1Name = BARCODE
index2Name = INDEX2

[ILLUMINA]
hiSeqNames = SN792 SN100
miSeqNames = M00721 M00100
hiSeqHeader = FCID,Lane,SampleID,SampleRef,Index,Description,Control,Recipe,Operator,SampleProject

miSeqHeaderSection = [Header], IEMFileVersion, Investigator Name, Project Name,Experiment Name, Date, Workflow, Application, Assay, Description, Chemistry
miSeqReadsSection = [Reads]
miSeqSettingsSection = [Settings], Adapter
miSeqDataSection = [Data], Sample_ID Sample_Name Sample_Plate Sample_Well I7_Index_ID index Sample_Project Description

miSeqWorkflow = GenerateFASTQ
miSeqApplication = FASTQ Only
miSeqChemistry = Amplicon

truSeqAdapter = Adapter,AGATCGGAAGAGCACACGTC
nexteraAdapter = Adapter,CTGTCTCTTATACACATCT
iemFileVersion = 4