PlasMapper Version 2.0
The PlasMapper server automatically generates and annotates plasmid maps using only the plasmid DNA sequence as input. Plasmid sequences up to 20,000 bp may be annotated and displayed. Plasmid figures may be rendered in PNG, JPG, SVG or SVGZ format. PlasMapper supports an extensive array of display options.
Download PlasMapper Source
Please cite the following:
Xiaoli Dong, Paul Stothard, Ian J. Forsythe, and David S. Wishart "PlasMapper: a web server for drawing and auto-annotating plasmid maps" Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W660-4.
For additional information on how to run PlasMapper, click
Select desired DNA sequence file (FASTA format only)
OR
Select a plasmid based on supplier
Amersham Pharmacia
Clontech
Epicentre
IBI
Invitrogen
NEB
Promega
Public
Stratagene
Lucigen
OR
paste the DNA sequence into the text window below (FASTA fomat only)
Feature Options:
Replication Origin(s)
Promoter(s)
Terminator(s)
Selectable Marker(s)
Regulatory Sequence(s)
Affinity Tag(s)
Miscellaneous Feature(s)
Reporter Gene(s)
Restriction site(s)
(Use common enzyme set to annotate sequence)
Unique sites
Unique sites from >= 4 cutters
Unique sites from >= 6 cutters
All sites
All sites from >= 4 cutters
All sites from >= 6 cutters
(Use all enzyme set to annotate sequence)
Unique sites
Unique sites from >= 4 cutters
Unique sites from >= 6 cutters
All sites
All sites from >= 4 cutters
All sites from >= 6 cutters
Display ORFs that are at least
codons long on the
Forward Strand
Reverse Strand
User Defined Features:
Feature1 Name
Start
Strand
Forward
Reverse
Category
origin of replication
promoter
terminator
selectable marker
reporter gene
regulatory sequence
tag
other gene
unique restriction site
restriction site
open reading frame
Stop
Feature2 Name
Start
Strand
Forward
Reverse
Category
origin of replication
promoter
terminator
selectable marker
reporter gene
regulatory sequence
tag
other gene
unique restriction site
restriction site
open reading frame
Stop
Feature3 Name
Start
Strand
Forward
Reverse
Category
origin of replication
promoter
terminator
selectable marker
reporter gene
regulatory sequence
tag
other gene
unique restriction site
restriction site
open reading frame
Stop
Feature4 Name
Start
Strand
Forward
Reverse
Category
origin of replication
promoter
terminator
selectable marker
reporter gene
regulatory sequence
tag
other gene
unique restriction site
restriction site
open reading frame
Stop
Feature5 Name
Start
Strand
Forward
Reverse
Category
origin of replication
promoter
terminator
selectable marker
reporter gene
regulatory sequence
tag
other gene
unique restriction site
restriction site
open reading frame
Stop
Feature6 Name
Start
Strand
Forward
Reverse
Category
origin of replication
promoter
terminator
selectable marker
reporter gene
regulatory sequence
tag
other gene
unique restriction site
restriction site
open reading frame
Stop
Plasmid Map Graphic Display Options:
Color Scheme
Regular
Inverse
Shading
On
Off
Label Colors
On
Off
Label Boxes
On
Off
Labels
On
Off
Inner Labels
On
Off
Legend
On
Off
Arrows
On
Off
Tick Marks
On
Off
Title
Display comment
Image format
PNG
JPG
SVG
SVGZ
Image Size
500 x 200
550 x 200
550 x 450
650 x 550
750 x 650
850 x 750
1000 x 800
1028 x 800
1059 x 800
1200 x 1000
2400 x 2000
Backbone Thickness
xxx-small
xx-small
x-small
small
medium
large
x-large
xx-large
xxx-large
Arc Thickness
xxx-small
xx-small
x-small
small
medium
large
x-large
xx-large
xxx-large
Problems? Questions? Suggestions? Please contact
Genome Canada Help Desk
or
David Wishart
Funding for this project was provided by
and
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