Package org.knime.base.node.viz.enrichment

The enrichment plotter node allows you to plot enrichment curves.

See:
          Description

Class Summary
EnrichmentPlotterDialog This is the dialog for the enrichment plotter in which the two columns for the curves are selected.
EnrichmentPlotterFactory This factory creates all necessary components for the enrichment plotter node.
EnrichmentPlotterModel This class is the model for the enrichment plotter node.
EnrichmentPlotterModel.EnrichmentPlot Small container class for a single enrichment curve.
EnrichmentPlotterSettings This class holds the settings for the enrichment plotter node.
EnrichmentPlotterSettings.Curve A simple container that holds the necessary information for specifying a curve that should be plotted.
EnrichmentPlotterView This is the view for the enrichment plotter node that shows all specified enrichment plots.
 

Enum Summary
EnrichmentPlotterSettings.PlotMode Enum for the three different plot modes.
 

Package org.knime.base.node.viz.enrichment Description

The enrichment plotter node allows you to plot enrichment curves. Enrichment curves are common in cheminformatics and molecular modeling. A model is trained on a few number of compounds with known activity and then a large number of molecules with unknown activity together with the training compounds are classified by the model. Then the molecules are sorted by the predicted activity value and a line is plotted where the sum of hits among the first x compounds is shown on the y -axis. The steeper the line, the better the enrichment is.



Copyright, 2003 - 2010. All rights reserved.
University of Konstanz, Germany.
Chair for Bioinformatics and Information Mining, Prof. Dr. Michael R. Berthold.
You may not modify, publish, transmit, transfer or sell, reproduce, create derivative works from, distribute, perform, display, or in any way exploit any of the content, in whole or in part, except as otherwise expressly permitted in writing by the copyright owner or as specified in the license file distributed with this product.