#############################################################################################
#
# Sequence of commands executed to test LIMS client and Web Services.
# Each line has the following form
# 
# <unique command name>:<command>
#
# Lines starting with '#' are ignored.
# For each command a corresponding file named <unique command name> should exists in 
# the folder 'expected-out'
#
# - common ----------------------------
common-login: login -u test -p <password>
common-list-initial-contacts: list-contacts
common-register-experiments-failed: register-experiments testdata/register-experiments/example3VExperiments.txt
common-list-empty-control-layouts: list-control-layouts
common-register-control-layout: register-control-layout testdata/register-controllayouts/CL1.txt
common-list-contacts: list-contacts
common-list-control-layouts: list-control-layouts
common-export-control-layout: export-control-layout CL1
common-list-experiments: list-experiments
common-list-material-types: list-material-types
common-list-invalid-material: list-materials BLABLA
common-list-viruses: list-materials VIRUS
common-register-viruses: register-viruses testdata/register-viruses/viruses.txt
common-list-new-viruses: list-materials VIRUS
common-register-viruses-twice: register-viruses testdata/register-viruses/viruses.txt
common-list-controls: list-materials CONTROL
common-register-controls: register-controls testdata/register-controls/controls.txt
common-list-new-controls: list-materials CONTROL
common-register-controls-twice: register-controls testdata/register-controls/controls.txt
common-list-study-objects: list-study-objects
common-list-projects: list-projects
common-register-genes: register-genes testdata/register-genes/genes.txt
common-list-genes: list-materials -p MyGene* GENE
common-register-oligos: register-oligos testdata/register-oligos/oligos1.txt
common-list-oligos: list-materials -p OL* OLIGO
common-register-oligos-failed: register-oligos testdata/register-oligos/oligos2.txt
common-list-oligos-after-rollback: list-materials -p OL* OLIGO
common-register-master-plate1: register-master-plate testdata/register-master-plates/MP001-1.txt xMB1xCode
common-register-master-plate2: register-master-plate testdata/register-master-plates/MP002-1.txt xMB2xCode
common-check-registered-master-plates: get-master-plate-info MP001-1 MP002-1
common-register-mp-repeated-well:    register-master-plate testdata/register-master-plates/mp-repeated-well.txt xMB5xCode
common-register-mp-unknown-material: register-master-plate testdata/register-master-plates/mp-unknown-material.txt xMB6xCode
common-register-mp-wrong-header:     register-master-plate testdata/register-master-plates/mp-wrong-header.txt xMB7xCode
common-register-mp-wrong-well-code:  register-master-plate testdata/register-master-plates/mp-wrong-well-code.txt xMBxCode
common-check-unregistered-wrong-mp: list-master-plates
common-logout: logout
# - IMSB (Pelkman's group) ----------------------------
IMSB-login: login -o IMSB -u test -p <password>
IMSB-list-empty-projects: list-projects
IMSB-register-project: register-project DEFAULT
IMSB-list-projects: list-projects
IMSB-register-experiments: register-experiments testdata/register-experiments/exampleIMSBExperiments.txt
IMSB-list-experiments: list-experiments
IMSB-list-study-objects: list-study-objects
IMSB-get-experiment1: get-experiment-info DEFAULT EXP1
IMSB-get-experiment3: get-experiment-info DEFAULT EXP3
IMSB-get-experiment13: get-experiment-info DEFAULT EXP1 EXP3
IMSB-add-experiment-property1: add-experiment-property DEFAULT EXP1 testdata/experiment-properties/dummy1.txt
IMSB-add-experiment-property2: add-experiment-property DEFAULT EXP1 testdata/experiment-properties/dummy2.txt
IMSB-add-experiment-property3: add-experiment-property DEFAULT EXP3 testdata/experiment-properties/dummy3.txt
IMSB-get-experiments-with-properties: get-experiment-info DEFAULT EXP1 EXP3
# --- check file versioning by adding the same file again
IMSB-add-new-version-of-experiment-property1: add-experiment-property DEFAULT EXP1 testdata/experiment-properties/dummy1.txt
IMSB-get-experiment-with-new-property-version: get-experiment-info DEFAULT EXP1
IMSB-get-experiment-property: get-experiment-property DEFAULT EXP1 out/dummy1.txt
IMSB-get-master-plate1: get-master-plate-info MP001-1
IMSB-get-master-plate2: get-master-plate-info MP001-1 MP002-1 
IMSB-register-data-set1: register-data-set -s <services-url>/etl-lims DEFAULT EXP1 CP001-1AA relative/data/set/path
IMSB-register-data-set2: register-data-set -s <services-url>/etl-lims DEFAULT EXP1 CP002-1XY one/two/three
IMSB-get-experiment-with-datasets: get-experiment-info DEFAULT EXP1
IMSB-list-cell-plates: list-cell-plates -s <services-url>/lims
IMSB-list-cell-plates-with-no-experiment: list-cell-plates -s <services-url>/lims -n
IMSB-list-diluation-plates: list-dilution-plates -s <services-url>/lims
IMSB-get-cell-plate: get-cell-plate-info CP002-1XY
IMSB-logout: logout
# - 3V ----------------------------
3V-login: login -o 3V -u test -p <password>
3V-list-empty-projects: list-projects
3V-register-project1: register-project NEMO
3V-register-project2: register-project NOE
3V-list-projects: list-projects
3V-register-dilution-plate: register-dilution-plates testdata/register-dilutionplate/exampleDilutionPlates.txt
3V-register-cell-plate: register-cell-plates testdata/register-cellplate/exampleCellPlates.txt
3V-register-reinfection-plates: register-reinfection-plates testdata/register-reinfectionplate/exampleReinfectionPlates.txt
3V-list-reinfection-plates: list-reinfection-plates
3V-register-control-layout: register-control-layout testdata/register-experiments/CL-3V.txt
3V-register-control-layout2: register-control-layout testdata/register-experiments/CL2-3V.txt
3V-list-control-layouts: list-control-layouts
3V-list-empty-experiments: list-experiments
3V-register-experiments: register-experiments testdata/register-experiments/example3VExperiments.txt
3V-list-experiments: list-experiments
3V-get-plate-locations: get-plate-locations NEMO EXP1 1
3V-register-data-set: register-data-set -s <services-url>/etl-lims 3VCP1 xxx/yyy/zzz
3V-register-analysis-data-set: register-data-set -s <services-url>/etl-lims -t IMAGE\\_ANALYSIS 3VCP1 analysis/result
3V-get-experiment: get-experiment-info NEMO EXP1
3V-list-cell-plates: list-cell-plates -s <services-url>/lims
3V-list-cell-plates-with-no-experiment: list-cell-plates -s <services-url>/lims -n
3V-list-dilution-plates: list-dilution-plates -s <services-url>/lims
3V-get-dilution-plate-info: get-dilution-plate-info 3V-125
3V-get-cell-plate-info: get-cell-plate-info 3VCP2
3V-logout: logout