package test.hdf5lib; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; import java.io.File; import ncsa.hdf.hdf5lib.H5; import ncsa.hdf.hdf5lib.HDF5Constants; import ncsa.hdf.hdf5lib.exceptions.HDF5Exception; import ncsa.hdf.hdf5lib.exceptions.HDF5LibraryException; import org.junit.After; import org.junit.Before; import org.junit.Test; @SuppressWarnings("all") public class TestH5T { private static final String H5_FILE = "test.h5"; int H5fid = -1; int H5strdid = -1; private final void _deleteFile(String filename) { File file = null; try { file = new File(filename); } catch (Throwable err) {} if (file.exists()) { try {file.delete();} catch (SecurityException e) {} } } @Before public void createH5file() throws NullPointerException, HDF5Exception { assertTrue("H5 open ids is 0", H5.getOpenIDCount()==0); H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); assertTrue("H5.H5Fcreate", H5fid > 0); H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1); assertTrue("H5.H5Tcopy", H5strdid > 0); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After public void deleteH5file() throws HDF5LibraryException { if (H5strdid >= 0) try {H5.H5Tclose(H5strdid);} catch (Exception ex) {} if (H5fid > 0) try {H5.H5Fclose(H5fid);} catch (Exception ex) {} _deleteFile(H5_FILE); } @Test(expected = HDF5LibraryException.class) public void testH5Tequal_type_error() throws Throwable { H5.H5Tequal(HDF5Constants.H5T_INTEGER, H5strdid); } @Test public void testH5Tget_class() { try { int result = H5.H5Tget_class(H5strdid); assertTrue("H5.H5Tget_class", result > 0); String class_name = H5.H5Tget_class_name(result); assertTrue("H5.H5Tget_class", class_name.compareTo("H5T_STRING")==0); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tget_class: " + err); } } @Test public void testH5Tget_size() { long dt_size = -1; try { dt_size = H5.H5Tget_size(H5strdid); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tget_size:H5.H5Tget_size " + err); } assertTrue("testH5Tget_size", dt_size > 0); } @Test public void testH5Tset_size() { long dt_size = 5; try { H5.H5Tset_size(H5strdid, dt_size); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tset_size:H5.H5Tset_size " + err); } try { dt_size = H5.H5Tget_size(H5strdid); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tget_size:H5.H5Tget_size " + err); } assertTrue("testH5Tget_size", dt_size == 5); } @Test public void testH5Tarray_create() { int filetype_id = -1; long[] adims = { 3, 5 }; try { filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); assertTrue("testH5Tarray_create", filetype_id > 0); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tarray_create.H5Tarray_create " + err); } finally { if (filetype_id >= 0) try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} } } @Test public void testH5Tget_array_ndims() { int filetype_id = -1; int ndims = 0; long[] adims = { 3, 5 }; try { filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tarray_create.H5Tarray_create " + err); } assertTrue("testH5Tget_array_ndims:H5Tarray_create", filetype_id > 0); try { ndims = H5.H5Tget_array_ndims(filetype_id); assertTrue("testH5Tget_array_ndims", ndims == 2); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tget_array_ndims.H5Tget_array_ndims " + err); } finally { if (filetype_id >= 0) try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} } } @Test public void testH5Tget_array_dims() { int filetype_id = -1; int ndims = 0; long[] adims = { 3, 5 }; long[] rdims = new long[2]; try { filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tarray_create.H5Tarray_create " + err); } assertTrue("testH5Tget_array_dims:H5Tarray_create", filetype_id > 0); try { ndims = H5.H5Tget_array_dims(filetype_id, rdims); assertTrue("testH5Tget_array_dims", ndims == 2); assertTrue("testH5Tget_array_dims", adims[0] == rdims[0]); assertTrue("testH5Tget_array_dims", adims[1] == rdims[1]); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tget_array_dims.H5Tget_array_dims " + err); } finally { if (filetype_id >= 0) try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} } } @Test public void testH5Tenum_functions() { int filetype_id =-1; String enum_type ="Enum_type"; byte[] enum_val = new byte[1]; String enum_name = null; // Create a enumerate datatype try { filetype_id = H5.H5Tcreate(HDF5Constants.H5T_ENUM, (long)1); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tenum_functions:H5Tcreate " + err); } assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id > 0); try { enum_val[0]=10; H5.H5Tenum_insert(filetype_id, "RED", enum_val); enum_val[0]=11; H5.H5Tenum_insert(filetype_id, "GREEN", enum_val); enum_val[0]=12; H5.H5Tenum_insert(filetype_id, "BLUE", enum_val); enum_val[0]=13; H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val); enum_val[0]=14; H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val); // Query member number and member index by member name, for enumeration type. assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5); assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3); // Commit enumeration datatype and close it */ H5.H5Tcommit(H5fid, enum_type, filetype_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5.H5Tclose(filetype_id); // Open the dataytpe for query filetype_id = H5.H5Topen(H5fid, enum_type, HDF5Constants.H5P_DEFAULT); assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id > 0); // Query member number and member index by member name, for enumeration type assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5); assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3); // Query member value by member name, for enumeration type H5.H5Tenum_valueof (filetype_id, "ORANGE", enum_val); assertTrue("Incorrect value for enum member", enum_val[0]==13); // Query member value by member index, for enumeration type H5.H5Tget_member_value (filetype_id, 2, enum_val); assertTrue("Incorrect value for enum member", enum_val[0]==12); // Query member name by member value, for enumeration type enum_val[0] = 14; enum_name = H5.H5Tenum_nameof(filetype_id, enum_val, 16); assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW")==0); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tenum_functions:query " + err); } finally { if (filetype_id >= 0) try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} } } @Test public void testH5Tenum_create_functions() { int filetype_id = -1; byte[] enum_val = new byte[1]; // Create a enumerate datatype try { filetype_id = H5.H5Tenum_create(HDF5Constants.H5T_NATIVE_INT); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tenum_create_functions:H5Tcreate " + err); } assertTrue("testH5Tenum_create_functions:H5Tcreate", filetype_id > 0); try { enum_val[0]=10; H5.H5Tenum_insert(filetype_id, "RED", enum_val); enum_val[0]=11; H5.H5Tenum_insert(filetype_id, "GREEN", enum_val); enum_val[0]=12; H5.H5Tenum_insert(filetype_id, "BLUE", enum_val); enum_val[0]=13; H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val); enum_val[0]=14; H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val); // Query member number and member index by member name, for enumeration type. assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5); assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tenum_create_functions:H5Tget_nmembers " + err); } finally { if (filetype_id >= 0) try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} } } @Test public void testH5Topaque_functions() { int filetype_id = -1; String opaque_name = null; // Create a enumerate datatype try { filetype_id = H5.H5Tcreate(HDF5Constants.H5T_OPAQUE, (long)4); } catch (Throwable err) { err.printStackTrace(); fail("testH5Topaque_functions:H5Tcreate " + err); } assertTrue("testH5Topaque_functions:H5Tcreate", filetype_id > 0); try { H5.H5Tset_tag(filetype_id, "opaque type"); opaque_name = H5.H5Tget_tag(filetype_id); assertTrue("Incorrect tag for opaque type", opaque_name.compareTo("opaque type")==0); } catch (Throwable err) { err.printStackTrace(); fail("testH5Topaque_functions:H5Tset_get_tag " + err); } finally { if (filetype_id >= 0) try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} } } @Test public void testH5Tvlen_create() { int filetype_id = -1; try { filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1); assertTrue("testH5Tvlen_create", filetype_id > 0); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tvlen_create.H5Tvlen_create " + err); } finally { if (filetype_id >= 0) try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} } } @Test public void testH5Tis_variable_str() { int filetype_id = -1; try { filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1); assertTrue("testH5Tis_variable_str", filetype_id > 0); // Convert to variable-length string H5.H5Tset_size(filetype_id, HDF5Constants.H5T_VARIABLE); // Check if datatype is VL string int vlclass = H5.H5Tget_class(filetype_id); assertTrue("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING); assertTrue("testH5Tis_variable_str:H5Tis_variable_str", H5.H5Tis_variable_str(filetype_id)); // Verify that the class detects as a string assertTrue("testH5Tis_variable_str:H5Tdetect_class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_STRING)); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tis_variable_str.H5Tis_variable_str " + err); } finally { if (filetype_id >= 0) try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} } } @Test public void testH5Tcompound_functions() { int filetype_id =-1; // Create a enumerate datatype try { filetype_id = H5.H5Tcreate(HDF5Constants.H5T_COMPOUND, (long)16); } catch (Throwable err) { err.printStackTrace(); fail("testH5Tcompound_functions:H5Tcreate " + err); } assertTrue("testH5Tcompound_functions:H5Tcreate", filetype_id > 0); try { H5.H5Tinsert(filetype_id, "Lon", 0, HDF5Constants.H5T_NATIVE_DOUBLE); H5.H5Tinsert(filetype_id, "Lat", 8, HDF5Constants.H5T_NATIVE_DOUBLE); // Query member number and member index by member name, for enumeration type. assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 2); assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "Lat") == 1); // We started to support this function for compound type in 1.8.6 release. int order = H5.H5Tget_order(filetype_id); assertFalse("Can't get order for compound type.", order == HDF5Constants.H5T_ORDER_ERROR); assertTrue("Wrong order for this type.", (order == HDF5Constants.H5T_ORDER_LE) || (order == HDF5Constants.H5T_ORDER_BE)); // Make certain that the correct classes can be detected assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_COMPOUND)); assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_FLOAT)); // Make certain that an incorrect class is not detected assertFalse("Can get incorrect class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_TIME)); // Query member name by member index String index_name = H5.H5Tget_member_name (filetype_id, 0); assertTrue("Incorrect name for member index", index_name.compareTo("Lon")==0); // Query member offset by member no long index_offset = H5.H5Tget_member_offset (filetype_id, 1); assertTrue("Incorrect offset for member no", index_offset == 8); // Query member type by member index int index_type = H5.H5Tget_member_type (filetype_id, 0); assertTrue("Incorrect type for member index", H5.H5Tequal(HDF5Constants.H5T_NATIVE_DOUBLE, index_type)); if (index_type >= 0) try {H5.H5Tclose(index_type);} catch (Exception ex) {} } catch (Throwable err) { err.printStackTrace(); fail("testH5Tcompound_functions:query " + err); } finally { if (filetype_id >= 0) try {H5.H5Tclose(filetype_id);} catch (Exception ex) {} } } }