package test.hdf5lib; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNotNull; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; import java.io.File; import ncsa.hdf.hdf5lib.H5; import ncsa.hdf.hdf5lib.HDF5Constants; import ncsa.hdf.hdf5lib.exceptions.HDF5Exception; import ncsa.hdf.hdf5lib.exceptions.HDF5LibraryException; import org.junit.After; import org.junit.Before; import org.junit.Test; @SuppressWarnings("all") public class TestH5R { private static final String H5_FILE = "testH5R.h5"; private static final int DIM_X = 4; private static final int DIM_Y = 6; int H5fid = -1; int H5dsid = -1; int H5did = -1; int H5gid = -1; int H5did2 = -1; long[] H5dims = { DIM_X, DIM_Y }; private final void _deleteFile(String filename) { File file = null; try { file = new File(filename); } catch (Throwable err) {} if (file.exists()) { try {file.delete();} catch (SecurityException e) {} } } private final int _createDataset(int fid, int dsid, String name, int dapl) { int did = -1; try { did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_STD_I32BE, dsid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Dcreate: " + err); } assertTrue("TestH5R._createDataset: ",did > 0); return did; } private final int _createGroup(int fid, String name) { int gid = -1; try { gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Gcreate: " + err); } assertTrue("TestH5R._createGroup: ",gid > 0); return gid; } @Before public void createH5file() throws NullPointerException, HDF5Exception { assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); try { H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5dsid = H5.H5Screate_simple(2, H5dims, null); H5gid = _createGroup(H5fid, "Group1"); H5did2 = _createDataset(H5gid, H5dsid, "dset2", HDF5Constants.H5P_DEFAULT); H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("TestH5D.createH5file: " + err); } assertTrue("TestH5D.createH5file: H5.H5Fcreate: ",H5fid > 0); assertTrue("TestH5D.createH5file: H5.H5Screate_simple: ",H5dsid > 0); assertTrue("TestH5D.createH5file: _createDataset: ",H5did > 0); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After public void deleteH5file() throws HDF5LibraryException { if (H5dsid > 0) try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} if (H5did > 0) try {H5.H5Dclose(H5did);} catch (Exception ex) {} if (H5fid > 0) try {H5.H5Fclose(H5fid);} catch (Exception ex) {} if (H5gid > 0) try {H5.H5Gclose(H5gid);} catch (Exception ex) {} if (H5did2 > 0) try {H5.H5Dclose(H5did2);} catch (Exception ex) {} _deleteFile(H5_FILE); } @Test public void testH5Rget_name() { int loc_id=H5fid; int ref_type=HDF5Constants.H5R_OBJECT; long ret_val=-1; byte[] ref=null; String[] name= {""}; String objName = "/dset"; try { ref = H5.H5Rcreate(H5fid, objName, ref_type, -1); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Rget_name:H5Rcreate " + err); } try { ret_val = H5.H5Rget_name(loc_id, ref_type, ref, name, 16); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Rget_name: " + err); } assertTrue("testH5Rget_name: H5Rget_name", ret_val>0); assertTrue("The name of the object: ", objName.equals(name[0])); } @Test public void testH5Rget_obj_type2() { int ref_type=HDF5Constants.H5R_OBJECT; byte[] ref=null; String objName = "/dset"; int obj_type = -1;; int[] otype = { 1 }; try { ref = H5.H5Rcreate(H5fid, objName, ref_type, -1); } catch(Throwable err) { err.printStackTrace(); } try { obj_type = H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_OBJECT, ref, otype); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Rget_obj_type2: " + err); } assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET); } @Test public void testH5Rcreate_refobj() { byte[] ref = null; try { ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Rcreate: " + err); } assertNotNull(ref); } @Test public void testH5Rcreate_regionrefobj() { byte[] ref = null; try { ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Rcreate: " + err); } assertNotNull(ref); } @Test public void testH5Rdereference() { byte[] ref1 = null; byte[] ref2 = null; int dataset_id = -1; int group_id = -1; try { //Create reference on dataset ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5R_DATASET_REGION, ref1); //Create reference on group ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5R_OBJECT, ref2); assertNotNull(ref1); assertNotNull(ref2); assertTrue(dataset_id>=0); assertTrue(group_id>=0); } catch (Throwable err) { err.printStackTrace(); fail("TestH5Rdereference " + err); } finally { try {H5.H5Dclose(dataset_id);} catch (Exception ex) {} try {H5.H5Gclose(group_id);} catch (Exception ex) {} } } @Test public void testH5Rget_region() { byte[] ref = null; int dsid = -1; try { ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); assertNotNull(ref); assertTrue(dsid>=0); } catch (Throwable err) { err.printStackTrace(); fail("TestH5Rget_region: " + err); } finally { try {H5.H5Sclose(dsid);} catch (Exception ex) {} } } @Test(expected = IllegalArgumentException.class) public void testH5Rget_name_Invalidreftype() throws Throwable { byte[] ref = null; String[] name= {""}; ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1); H5.H5Rget_name(H5fid, HDF5Constants.H5R_DATASET_REGION, ref, name, 16); } @Test(expected = NullPointerException.class) public void testH5Rget_name_NULLreference() throws Throwable { byte[] ref = null; String[] name= {""}; H5.H5Rget_name(H5fid, HDF5Constants.H5R_OBJECT, ref, name, 16); } @Test(expected = HDF5LibraryException.class) public void testH5Rget_obj_type2_Invalidreftype() throws Throwable { byte[] ref = null; int[] otype = { 1 }; ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1); H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_DATASET_REGION, ref, otype); } @Test(expected = HDF5LibraryException.class) public void testH5Rcreate_InvalidObjectName() throws Throwable { H5.H5Rcreate(H5fid, "/GROUPS", HDF5Constants.H5R_OBJECT, -1); } @Test(expected = HDF5LibraryException.class) public void testH5Rcreate_Invalidspace_id() throws Throwable { H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, -1); } @Test(expected = IllegalArgumentException.class) public void testH5Rcreate_Invalidreftype() throws Throwable { H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_BADTYPE, -1); } @Test(expected = IllegalArgumentException.class) public void testH5Rgetregion_Invalidreftype() throws Throwable { byte[] ref = null; ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, H5dsid); H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); } @Test(expected = IllegalArgumentException.class) public void testH5Rgetregion_Badreferencetype() throws Throwable { byte[] ref = null; ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, H5dsid); H5.H5Rget_region(H5fid, HDF5Constants.H5R_OBJECT, ref); } @Test(expected = NullPointerException.class) public void testH5Rgetregion_Nullreference() throws Throwable { byte[] ref = null; H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); } @Test(expected = NullPointerException.class) public void testH5Rdereference_Nullreference() throws Throwable { byte[] ref = null; H5.H5Rdereference(H5did2, HDF5Constants.H5R_OBJECT, ref); } @Test(expected = IllegalArgumentException.class) public void testH5Rdereference_Invalidreference() throws Throwable { byte[] ref1 = null; byte[] ref2 = null; ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); H5.H5Rdereference(H5gid, HDF5Constants.H5R_OBJECT, ref1); } }