package test.hdf5lib; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; import java.io.File; import java.text.DecimalFormat; import java.text.NumberFormat; import ncsa.hdf.hdf5lib.H5; import ncsa.hdf.hdf5lib.HDF5Constants; import ncsa.hdf.hdf5lib.exceptions.HDF5Exception; import ncsa.hdf.hdf5lib.exceptions.HDF5LibraryException; import org.junit.After; import org.junit.Before; import org.junit.Test; public class TestH5PData { private static final String H5_FILE = "test.h5"; private static final int DIM_X = 12; private static final int DIM_Y = 18; int H5fid = -1; int H5dsid = -1; int H5did = -1; int plist_id = -1; long[] H5dims = { DIM_X, DIM_Y }; double windchillF[][] = {{36.0, 31.0, 25.0, 19.0, 13.0, 7.0, 1.0, -5.0, -11.0, -16.0, -22.0, -28.0, -34.0, -40.0, -46.0, -52.0, -57.0, -63.0}, {34.0, 27.0, 21.0, 15.0, 9.0, 3.0, -4.0, -10.0, -16.0, -22.0, -28.0, -35.0, -41.0, -47.0, -53.0, -59.0, -66.0, -72.0}, {32.0, 25.0, 19.0, 13.0, 6.0, 0.0, -7.0, -13.0, -19.0, -26.0, -32.0, -39.0, -45.0, -51.0, -58.0, -64.0, -71.0, -77.0}, {30.0, 24.0, 17.0, 11.0, 4.0, -2.0, -9.0, -15.0, -22.0, -29.0, -35.0, -42.0, -48.0, -55.0, -61.0, -68.0, -74.0, -81.0}, {29.0, 23.0, 16.0, 9.0, 3.0, -4.0, -11.0, -17.0, -24.0, -31.0, -37.0, -44.0, -51.0, -58.0, -64.0, -71.0, -78.0, -84.0}, {28.0, 22.0, 15.0, 8.0, 1.0, -5.0, -12.0, -19.0, -26.0, -33.0, -39.0, -46.0, -53.0, -60.0, -67.0, -73.0, -80.0, -87.0}, {28.0, 21.0, 14.0, 7.0, 0.0, -7.0, -14.0, -21.0, -27.0, -34.0, -41.0, -48.0, -55.0, -62.0, -69.0, -76.0, -82.0, -89.0}, {27.0, 20.0, 13.0, 6.0, -1.0, -8.0, -15.0, -22.0, -29.0, -36.0, -43.0, -50.0, -57.0, -64.0, -71.0, -78.0, -84.0, -91.0}, {26.0, 19.0, 12.0, 5.0, -2.0, -9.0, -16.0, -23.0, -30.0, -37.0, -44.0, -51.0, -58.0, -65.0, -72.0, -79.0, -86.0, -93.0}, {26.0, 19.0, 12.0, 4.0, -3.0, -10.0, -17.0, -24.0, -31.0, -38.0, -45.0, -52.0, -60.0, -67.0, -74.0, -81.0, -88.0, -95.0}, {25.0, 18.0, 11.0, 4.0, -3.0, -11.0, -18.0, -25.0, -32.0, -39.0, -46.0, -54.0, -61.0, -68.0, -75.0, -82.0, -89.0, -97.0}, {25.0, 17.0, 10.0, 3.0, -4.0, -11.0, -19.0, -26.0, -33.0, -40.0, -48.0, -55.0, -62.0, -69.0, -76.0, -84.0, -91.0, -98.0} }; private final void _deleteFile(String filename) { File file = new File(filename); if (file.exists()) { try {file.delete();} catch (SecurityException e) {} } } private final int _createFloatDataset(int fid, int dsid, String name, int dapl) { int did = -1; try { did = H5.H5Dcreate(fid, name, HDF5Constants.H5T_NATIVE_FLOAT, dsid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Dcreate: " + err); } assertTrue("TestH5D._createFloatDataset: ", did > 0); return did; } @Before public void createH5file() throws NullPointerException, HDF5Exception { assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); try { H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5dsid = H5.H5Screate_simple(2, H5dims, null); H5did = _createFloatDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT); plist_id = H5.H5Pcreate(HDF5Constants.H5P_DATASET_XFER); } catch (Throwable err) { err.printStackTrace(); fail("TestH5D.createH5file: " + err); } assertTrue("TestH5D.createH5file: H5.H5Fcreate: ",H5fid > 0); assertTrue("TestH5D.createH5file: H5.H5Screate_simple: ",H5dsid > 0); assertTrue("TestH5D.createH5file: _createFloatDataset: ",H5did > 0); assertTrue(plist_id > 0); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After public void deleteH5file() throws HDF5LibraryException { if (H5dsid > 0) try {H5.H5Sclose(H5dsid);} catch (Exception ex) {} if (H5did > 0) try {H5.H5Dclose(H5did);} catch (Exception ex) {} if (H5fid > 0) try {H5.H5Fclose(H5fid);} catch (Exception ex) {} _deleteFile(H5_FILE); if (plist_id > 0) try {H5.H5Pclose(plist_id);} catch (Exception ex) {} } @Test public void testH5Pdata_transform() { String f_to_c = "(5/9.0)*(x-32)"; double windchillFread[][] = new double[DIM_X][DIM_Y]; double windchillC; NumberFormat formatter = new DecimalFormat("#0.000"); try { H5.H5Pset_data_transform(plist_id, f_to_c); H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, plist_id, windchillF); H5.H5Dread(H5did, HDF5Constants.H5T_NATIVE_DOUBLE, HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL, HDF5Constants.H5P_DEFAULT, windchillFread); } catch (Throwable err) { err.printStackTrace(); fail("H5Pdata_transform: " + err); } for(int row = 0; row < DIM_X; row++) for(int col = 0; col < DIM_Y; col++) { windchillC = (5/9.0)*(windchillF[row][col]-32); String Cstr = formatter.format(windchillC); String Fread = formatter.format(windchillFread[row][col]); assertTrue("H5Pdata_transform: <"+row+","+col+">"+Fread+"="+Cstr, Fread.compareTo(Cstr)==0); } } @Test public void testH5P_buffer() { long default_size = 0; long size = 0; try { default_size = H5.H5Pget_buffer_size(plist_id); H5.H5Pset_buffer_size(plist_id, DIM_X*DIM_Y); size = H5.H5Pget_buffer_size(plist_id); } catch (Throwable err) { err.printStackTrace(); fail("H5P_buffer: " + err); } assertTrue("H5P_buffer default: "+default_size, default_size==1024*1024); assertTrue("H5P_buffer default: "+size, size==DIM_X*DIM_Y); } }