package test.hdf5lib; import static org.junit.Assert.assertFalse; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; import java.util.ArrayList; import ncsa.hdf.hdf5lib.H5; import ncsa.hdf.hdf5lib.HDF5Constants; import ncsa.hdf.hdf5lib.callbacks.H5L_iterate_cb; import ncsa.hdf.hdf5lib.callbacks.H5L_iterate_t; import ncsa.hdf.hdf5lib.exceptions.HDF5LibraryException; import ncsa.hdf.hdf5lib.structs.H5L_info_t; import org.junit.After; import org.junit.Before; import org.junit.Test; @SuppressWarnings("all") public class TestH5Lbasic { private static final String H5_FILE = "sourceTest/java/test/hdf5lib/h5ex_g_iterate.hdf"; int H5fid = -1; @Before public void openH5file() throws HDF5LibraryException, NullPointerException { assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); try { H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Fopen: openH5file: " + err); } } @After public void closeH5file() throws HDF5LibraryException { if (H5fid > 0) { try {H5.H5Fclose(H5fid);} catch (Exception ex) {} } } @Test public void testH5Lexists() { boolean link_exists = false; try { link_exists = H5.H5Lexists(H5fid, "None", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lexists: " + err); } assertFalse("H5Lexists ",link_exists); try { link_exists = H5.H5Lexists(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lexists: " + err); } assertTrue("H5Lexists ",link_exists); try { link_exists = H5.H5Lexists(H5fid, "G1/DS2", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lexists: " + err); } assertTrue("H5Lexists ",link_exists); } @Test(expected = HDF5LibraryException.class) public void testH5Lget_info_not_exist() throws Throwable { H5.H5Lget_info(H5fid, "None", HDF5Constants.H5P_DEFAULT); } @Test public void testH5Lget_info_dataset() { H5L_info_t link_info = null; try { link_info = H5.H5Lget_info(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info: " + err); } assertFalse("H5Lget_info ",link_info==null); assertTrue("H5Lget_info link type",link_info.type==HDF5Constants.H5L_TYPE_HARD); } @Test public void testH5Lget_info_hardlink() { H5L_info_t link_info = null; try { link_info = H5.H5Lget_info(H5fid, "L1", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info: " + err); } assertFalse("H5Lget_info ",link_info==null); assertTrue("H5Lget_info link type",link_info.type==HDF5Constants.H5L_TYPE_HARD); assertTrue("Link Address ",link_info.address_val_size>0); } @Test(expected = HDF5LibraryException.class) public void testH5Lget_info_by_idx_name_not_exist_name() throws Throwable { H5.H5Lget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) public void testH5Lget_info_by_idx_name_not_exist_create() throws Throwable { H5.H5Lget_info_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) public void testH5Lget_info_by_idx_not_exist_name() throws Throwable { H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT); } @Test(expected = HDF5LibraryException.class) public void testH5Lget_info_by_idx_not_exist_create() throws Throwable { H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 5, HDF5Constants.H5P_DEFAULT); } @Test public void testH5Lget_info_by_idx_n0() { H5L_info_t link_info = null; H5L_info_t link_info2 = null; try { link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info_by_idx: " + err); } assertFalse("H5Lget_info_by_idx ",link_info==null); assertTrue("H5Lget_info_by_idx link type",link_info.type==HDF5Constants.H5L_TYPE_HARD); try { link_info2 = H5.H5Lget_info(H5fid, "DS1", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info: " + err); } assertTrue("Link Address ",link_info.address_val_size==link_info2.address_val_size); } @Test public void testH5Lget_info_by_idx_n3() { H5L_info_t link_info = null; H5L_info_t link_info2 = null; try { link_info = H5.H5Lget_info_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info_by_idx: " + err); } assertFalse("H5Lget_info_by_idx ",link_info==null); assertTrue("H5Lget_info_by_idx link type",link_info.type==HDF5Constants.H5L_TYPE_HARD); try { link_info2 = H5.H5Lget_info(H5fid, "L1", HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_info: " + err); } assertTrue("Link Address ",link_info.address_val_size==link_info2.address_val_size); } @Test(expected = HDF5LibraryException.class) public void testH5Lget_name_by_idx_not_exist() throws Throwable { H5.H5Lget_name_by_idx(H5fid, "None", HDF5Constants.H5_INDEX_CRT_ORDER, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } @Test public void testH5Lget_name_by_idx_n0() { String link_name = null; try { link_name = H5.H5Lget_name_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_name_by_idx: " + err); } assertFalse("H5Lget_name_by_idx ",link_name==null); assertTrue("Link Name ",link_name.compareTo("DS1")==0); } @Test public void testH5Lget_name_by_idx_n3() { String link_name = null; try { link_name = H5.H5Lget_name_by_idx(H5fid, "/", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 3, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lget_name_by_idx: " + err); } assertFalse("H5Lget_name_by_idx ",link_name==null); assertTrue("Link Name ",link_name.compareTo("L1")==0); } @Test public void testH5Lvisit() { class idata { public String link_name = null; public int link_type = -1; idata(String name, int type) { this.link_name = name; this.link_type = type; } } class H5L_iter_data implements H5L_iterate_t { public ArrayList iterdata = new ArrayList(); } H5L_iterate_t iter_data = new H5L_iter_data(); class H5L_iter_callback implements H5L_iterate_cb { public int callback(int group, String name, H5L_info_t info, H5L_iterate_t op_data) { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; } } H5L_iterate_cb iter_cb = new H5L_iter_callback(); try { H5.H5Lvisit(H5fid, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb, iter_data); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lvisit: " + err); } assertFalse("H5Lvisit ",((H5L_iter_data)iter_data).iterdata.isEmpty()); assertTrue("H5Lvisit "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==5); assertTrue("H5Lvisit "+(((H5L_iter_data)iter_data).iterdata.get(0)).link_name,(((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1")==0); assertTrue("H5Lvisit "+(((H5L_iter_data)iter_data).iterdata.get(1)).link_name,(((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DT1")==0); assertTrue("H5Lvisit "+(((H5L_iter_data)iter_data).iterdata.get(2)).link_name,(((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1")==0); assertTrue("H5Lvisit "+(((H5L_iter_data)iter_data).iterdata.get(3)).link_name,(((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("G1/DS2")==0); assertTrue("H5Lvisit "+(((H5L_iter_data)iter_data).iterdata.get(4)).link_name,(((H5L_iter_data)iter_data).iterdata.get(4)).link_name.compareToIgnoreCase("L1")==0); } @Test public void testH5Lvisit_by_name() { class idata { public String link_name = null; public int link_type = -1; idata(String name, int type) { this.link_name = name; this.link_type = type; } } class H5L_iter_data implements H5L_iterate_t { public ArrayList iterdata = new ArrayList(); } H5L_iterate_t iter_data = new H5L_iter_data(); class H5L_iter_callback implements H5L_iterate_cb { public int callback(int group, String name, H5L_info_t info, H5L_iterate_t op_data) { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; } } H5L_iterate_cb iter_cb = new H5L_iter_callback(); try { H5.H5Lvisit_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, iter_cb, iter_data, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Lvisit_by_name: " + err); } assertFalse("H5Lvisit_by_name ",((H5L_iter_data)iter_data).iterdata.isEmpty()); assertTrue("H5Lvisit_by_name "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==1); assertTrue("H5Lvisit_by_name "+(((H5L_iter_data)iter_data).iterdata.get(0)).link_name,(((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS2")==0); } @Test public void testH5Literate() { class idata { public String link_name = null; public int link_type = -1; idata(String name, int type) { this.link_name = name; this.link_type = type; } } class H5L_iter_data implements H5L_iterate_t { public ArrayList iterdata = new ArrayList(); } H5L_iterate_t iter_data = new H5L_iter_data(); class H5L_iter_callback implements H5L_iterate_cb { public int callback(int group, String name, H5L_info_t info, H5L_iterate_t op_data) { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; } } H5L_iterate_cb iter_cb = new H5L_iter_callback(); try { H5.H5Literate(H5fid, HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L, iter_cb, iter_data); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Literate: " + err); } assertFalse("H5Literate ",((H5L_iter_data)iter_data).iterdata.isEmpty()); assertTrue("H5Literate "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==4); assertTrue("H5Literate "+(((H5L_iter_data)iter_data).iterdata.get(0)).link_name,(((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS1")==0); assertTrue("H5Literate "+(((H5L_iter_data)iter_data).iterdata.get(1)).link_name,(((H5L_iter_data)iter_data).iterdata.get(1)).link_name.compareToIgnoreCase("DT1")==0); assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(2)).link_name,(((H5L_iter_data)iter_data).iterdata.get(2)).link_name.compareToIgnoreCase("G1")==0); assertTrue("H5Literate "+((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(3)).link_name.compareToIgnoreCase("L1")==0); } @Test public void testH5Literate_by_name() { class idata { public String link_name = null; public int link_type = -1; idata(String name, int type) { this.link_name = name; this.link_type = type; } } class H5L_iter_data implements H5L_iterate_t { public ArrayList iterdata = new ArrayList(); } H5L_iterate_t iter_data = new H5L_iter_data(); class H5L_iter_callback implements H5L_iterate_cb { public int callback(int group, String name, H5L_info_t info, H5L_iterate_t op_data) { idata id = new idata(name, info.type); ((H5L_iter_data)op_data).iterdata.add(id); return 0; } } H5L_iterate_cb iter_cb = new H5L_iter_callback(); try { H5.H5Literate_by_name(H5fid, "G1", HDF5Constants.H5_INDEX_NAME, HDF5Constants.H5_ITER_INC, 0L, iter_cb, iter_data, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { err.printStackTrace(); fail("H5.H5Literate_by_name: " + err); } assertFalse("H5Literate_by_name ",((H5L_iter_data)iter_data).iterdata.isEmpty()); assertTrue("H5Literate_by_name "+((H5L_iter_data)iter_data).iterdata.size(),((H5L_iter_data)iter_data).iterdata.size()==1); assertTrue("H5Literate_by_name "+((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name,((idata)((H5L_iter_data)iter_data).iterdata.get(0)).link_name.compareToIgnoreCase("DS2")==0); } }