package test.hdf5lib; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertTrue; import static org.junit.Assert.fail; import java.io.File; import ncsa.hdf.hdf5lib.H5; import ncsa.hdf.hdf5lib.HDF5Constants; import ncsa.hdf.hdf5lib.exceptions.HDF5LibraryException; import org.junit.After; import org.junit.Before; import org.junit.Test; public class TestH5F { private static final String H5_FILE = "test.h5"; private static final int COUNT_OBJ_FILE = 1; private static final int COUNT_OBJ_DATASET = 0; private static final int COUNT_OBJ_GROUP = 0; private static final int COUNT_OBJ_DATATYPE = 0; private static final int COUNT_OBJ_ATTR = 0; private static final int COUNT_OBJ_ALL = (COUNT_OBJ_FILE + COUNT_OBJ_DATASET + COUNT_OBJ_GROUP + COUNT_OBJ_DATATYPE + COUNT_OBJ_ATTR); private static final int[] OBJ_COUNTS = { COUNT_OBJ_FILE, COUNT_OBJ_DATASET, COUNT_OBJ_GROUP, COUNT_OBJ_DATATYPE, COUNT_OBJ_ATTR, COUNT_OBJ_ALL }; private static final int[] OBJ_TYPES = { HDF5Constants.H5F_OBJ_FILE, HDF5Constants.H5F_OBJ_DATASET, HDF5Constants.H5F_OBJ_GROUP, HDF5Constants.H5F_OBJ_DATATYPE, HDF5Constants.H5F_OBJ_ATTR, HDF5Constants.H5F_OBJ_ALL }; int H5fid = -1; private final void _deleteFile(String filename) { File file = new File(filename); if (file.exists()) { try {file.delete();} catch (SecurityException e) {} } } @Before public void createH5file() throws HDF5LibraryException, NullPointerException { assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0); H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT); H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL); } @After public void deleteH5file() throws HDF5LibraryException { if (H5fid > 0) { try {H5.H5Fclose(H5fid);} catch (Exception ex) {} } _deleteFile(H5_FILE); } @Test public void testH5Fget_create_plist() { int plist = -1; try { plist = H5.H5Fget_create_plist(H5fid); } catch (Throwable err) { fail("H5.H5Fget_create_plist: " + err); } assertTrue(plist > 0); try {H5.H5Pclose(plist);} catch (HDF5LibraryException e) {e.printStackTrace();} } @Test(expected = HDF5LibraryException.class) public void testH5Fget_create_plist_closed() throws Throwable { int fid = -1; try { fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fopen: " + err); } try { H5.H5Fclose(fid); } catch (Exception ex) { } // it should fail because the file was closed. H5.H5Fget_create_plist(fid); } @Test public void testH5Fget_access_plist() { int plist = -1; try { plist = H5.H5Fget_access_plist(H5fid); } catch (Throwable err) { fail("H5.H5Fget_access_plist: " + err); } assertTrue(plist > 0); try {H5.H5Pclose(plist);} catch (HDF5LibraryException e) {e.printStackTrace();} } @Test(expected = HDF5LibraryException.class) public void testH5Fget_access_plist_closed() throws Throwable { int fid = -1; try { fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fopen: " + err); } try { H5.H5Fclose(fid); } catch (Exception ex) { } // it should fail because the file was closed. H5.H5Fget_access_plist(fid); } @Test public void testH5Fget_intent_rdwr() { int intent = 0; int fid = -1; try { fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDWR, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fopen: " + err); } try { intent = H5.H5Fget_intent(fid); } catch (Throwable err) { fail("H5.H5Fget_intent: " + err); } assertEquals(intent, HDF5Constants.H5F_ACC_RDWR); try { H5.H5Fclose(fid); } catch (Exception ex) { } } @Test public void testH5Fget_intent_rdonly() { int intent = 0; int fid = -1; try { fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY, HDF5Constants.H5P_DEFAULT); } catch (Throwable err) { fail("H5.H5Fopen: " + err); } try { intent = H5.H5Fget_intent(fid); System.err.println(intent); } catch (Throwable err) { fail("H5.H5Fget_intent: " + err); } try { H5.H5Fclose(fid); } catch (Exception ex) { } // BROKEN in HDF5 1.8.13 and HDF-Java 2.10.1 //assertEquals(intent, HDF5Constants.H5F_ACC_RDONLY); } @Test public void testH5Fget_obj_count() { long count = -1; for (int i = 0; i < OBJ_TYPES.length; i++) { try { count = H5.H5Fget_obj_count_long(H5fid, OBJ_TYPES[i]); } catch (Throwable err) { fail("H5.H5Fget_obj_count: " + err); } assertEquals(count, OBJ_COUNTS[i]); } } @Test public void testH5Fget_obj_ids() { long count = 0; int max_objs = 100; int[] obj_id_list = new int[max_objs]; int[] open_obj_counts = new int[OBJ_TYPES.length]; for (int i = 0; i < OBJ_TYPES.length; i++) open_obj_counts[i] = 0; open_obj_counts[0] = 1; for (int i = 0; i < OBJ_TYPES.length - 1; i++) open_obj_counts[OBJ_TYPES.length - 1] += open_obj_counts[i]; for (int i = 0; i < OBJ_TYPES.length; i++) { try { count = H5.H5Fget_obj_ids_long(H5fid, OBJ_TYPES[i], max_objs, obj_id_list); } catch (Throwable err) { fail("H5.H5Fget_obj_ids: " + err); } assertEquals(count, open_obj_counts[i]); } } }