- canDetectProcesses() - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns true
, if process detection is available on this system.
- capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Returns the capacity of elements in the array.
- capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
- capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
- capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
- capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
- capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
- capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
- capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
- capacityHyperRows - Variable in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
- ch.systemsx.cisd.base - package ch.systemsx.cisd.base
-
- ch.systemsx.cisd.base.annotation - package ch.systemsx.cisd.base.annotation
-
- ch.systemsx.cisd.base.convert - package ch.systemsx.cisd.base.convert
-
- ch.systemsx.cisd.base.exceptions - package ch.systemsx.cisd.base.exceptions
-
This package provides basic exceptions thrown by CISD software.
- ch.systemsx.cisd.base.image - package ch.systemsx.cisd.base.image
-
- ch.systemsx.cisd.base.io - package ch.systemsx.cisd.base.io
-
- ch.systemsx.cisd.base.mdarray - package ch.systemsx.cisd.base.mdarray
-
This package provides an implementation of multi-dimensional numerical arrays in Java.
- ch.systemsx.cisd.base.namedthread - package ch.systemsx.cisd.base.namedthread
-
This package provides named pool threads when using an
java.util.concurrent.ExecutorService
.
- ch.systemsx.cisd.base.tests - package ch.systemsx.cisd.base.tests
-
- ch.systemsx.cisd.base.unix - package ch.systemsx.cisd.base.unix
-
This package provides some basic (POSIX-compliant) Unix system calls.
- ch.systemsx.cisd.base.utilities - package ch.systemsx.cisd.base.utilities
-
This package provides some basic utility classes.
- changeByteOrder(short) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Changes the byte order of the bytes constituting s.
- changeByteOrder(char) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Changes the byte order of the bytes constituting c.
- changeByteOrder(int) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Changes the byte order of the bytes constituting i.
- changeByteOrder(float) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Changes the byte order of the bytes constituting f.
- changeByteOrder(long) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Changes the byte order of the bytes constituting l.
- changeByteOrder(double) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Changes the byte order of the bytes constituting d.
- CHAR_SIZE - Static variable in class ch.systemsx.cisd.base.convert.NativeData
-
Size of a char
value in byte
s.
- charToByte(char[], NativeData.ByteOrder, int, int) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Converts a char[]
array to a byte[]
array.
- charToByte(char[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Converts a char[]
array to a byte[]
array.
- check() - Static method in exception ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked
-
- CheckedExceptionTunnel - Exception in ch.systemsx.cisd.base.exceptions
-
An exception for tunneling checked exception through code that doesn't expect it.
- CheckedExceptionTunnel(Exception) - Constructor for exception ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel
-
Returns an unchecked exception from a checkedException.
- CheckedExceptionTunnel(String) - Constructor for exception ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel
-
- CheckedExceptionTunnel() - Constructor for exception ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel
-
- cleanUpDirectoryBeforeTheTest(File) - Method in class ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase
-
Deletes, recreates and verifies that this is the empty directory
- clearRunnableName() - Method in class ch.systemsx.cisd.base.namedthread.PoolNameThread
-
Clears the name of the runnable, setting the name of the thread to the pool name.
- close() - Method in class ch.systemsx.cisd.base.io.AdapterIInputStreamToInputStream
-
- close() - Method in class ch.systemsx.cisd.base.io.AdapterInputStreamToIInputStream
-
- close() - Method in class ch.systemsx.cisd.base.io.AdapterIOutputStreamToOutputStream
-
- close() - Method in class ch.systemsx.cisd.base.io.AdapterOutputStreamToIOutputStream
-
- close() - Method in class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
-
- close() - Method in interface ch.systemsx.cisd.base.io.IInputStream
-
- close() - Method in interface ch.systemsx.cisd.base.io.IOutputStream
-
- close() - Method in class ch.systemsx.cisd.base.io.RandomAccessFileImpl
-
- computeHyperRowLength(int[]) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
- computeIndex(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Computes the linear index for the multi-dimensional indices provided.
- computeIndex(int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Computes the linear index for the two-dimensional (indexX, indexY) provided.
- computeIndex(int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Computes the linear index for the three-dimensional (indexX, indexY, indexZ)
provided.
- computeReverseIndex(int) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Computes the multi-dimensional index from the linearIndex.
- copyByteToChar(byte[], int, char[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Copies a range from an array of byte
into an array of char
.
- copyByteToDouble(byte[], int, double[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Copies a range from an array of byte
into an array of double
.
- copyByteToFloat(byte[], int, float[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Copies a range from an array of byte
into an array of float
.
- copyByteToInt(byte[], int, int[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Copies a range from an array of byte
into an array of int
.
- copyByteToLong(byte[], int, long[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Copies a range from an array of byte
into an array of long
.
- copyByteToShort(byte[], int, short[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Copies a range from an array of byte
into an array of short
.
- copyCharToByte(char[], int, byte[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Copies a range from an array of char
into an array of byte
.
- copyDoubleToByte(double[], int, byte[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Copies a range from an array of double
into an array of byte
.
- copyFloatToByte(float[], int, byte[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Copies a range from an array of float
into an array of byte
.
- copyIntToByte(int[], int, byte[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Copies a range from an array of int
into an array of byte
.
- copyLongToByte(long[], int, byte[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Copies a range from an array of long
into an array of byte
.
- copyResourceToFile(String, RandomAccessFile) - Static method in class ch.systemsx.cisd.base.utilities.ResourceUtilities
-
Copies the resource with the given name to a file on the file system..
- copyResourceToTempFile(String, String, String) - Static method in class ch.systemsx.cisd.base.utilities.ResourceUtilities
-
Copies the resource with the given name to a temporary file.
- copyResourceToTempFile(String, Path, String, String, boolean) - Static method in class ch.systemsx.cisd.base.utilities.ResourceUtilities
-
Copies the resource with the given name to a temporary file.
- copyShortToByte(short[], int, byte[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Copies a range from an array of short
into an array of byte
.
- corePoolSize(int) - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadPoolExecutor
-
Same as ThreadPoolExecutor.setCorePoolSize(int)
, but returns the object itself for chaining.
- create(String) - Method in class ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase
-
Creates a File
with name in the working directory.
- createDirectoryInUnitTestRoot(String) - Method in class ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase
-
Creates a directory in the unit test root directory "targets/unit-test-wd"
- createHardLink(String, String) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Creates a hard link linkName that points to fileName.
- createSymbolicLink(String, String) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Creates a symbolic link linkName that points to fileName.
- createTransformer() - Method in interface ch.systemsx.cisd.base.image.IImageTransformerFactory
-
Creates a transformer object based on the attributes of the factory.
- createTransformer() - Method in interface ch.systemsx.cisd.base.image.IStreamingImageTransformerFactory
-
Creates a transformer object based on the attributes of the factory.
- get(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
Returns the value of array at the position defined by indices.
- get(int) - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
Returns the value of a one-dimensional array at the position defined by index.
- get(int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
Returns the value of a two-dimensional array at the position defined by indexX and
indexY.
- get(int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
Returns the value of a three-dimensional array at the position defined by indexX,
indexY and indexZ.
- get(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
Returns the value of array at the position defined by indices.
- get(int) - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
Returns the value of a one-dimensional array at the position defined by index.
- get(int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
Returns the value of a two-dimensional array at the position defined by indexX and
indexY.
- get(int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
Returns the value of a three-dimensional array at the position defined by indexX,
indexY and indexZ.
- get(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
Returns the value of array at the position defined by indices.
- get(int) - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
Returns the value of a one-dimensional array at the position defined by index.
- get(int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
Returns the value of a two-dimensional array at the position defined by indexX and
indexY.
- get(int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
Returns the value of a three-dimensional array at the position defined by indexX,
indexY and indexZ.
- get(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
Returns the value of array at the position defined by indices.
- get(int) - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
Returns the value of a one-dimensional array at the position defined by index.
- get(int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
Returns the value of a two-dimensional array at the position defined by indexX and
indexY.
- get(int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
Returns the value of a three-dimensional array at the position defined by indexX,
indexY and indexZ.
- get(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
Returns the value of array at the position defined by indices.
- get(int) - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
Returns the value of a one-dimensional array at the position defined by index.
- get(int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
Returns the value of a two-dimensional array at the position defined by indexX and
indexY.
- get(int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
Returns the value of a three-dimensional array at the position defined by indexX,
indexY and indexZ.
- get(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
Returns the value of array at the position defined by indices.
- get(int) - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
Returns the value of a one-dimensional array at the position defined by index.
- get(int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
Returns the value of a two-dimensional array at the position defined by indexX and
indexY.
- get(int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
Returns the value of a three-dimensional array at the position defined by indexX,
indexY and indexZ.
- get(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
Returns the value of array at the position defined by indices.
- get(int) - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
Returns the value of a one-dimensional array at the position defined by index.
- get(int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
Returns the value of a two-dimensional array at the position defined by indexX and
indexY.
- get(int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
Returns the value of a three-dimensional array at the position defined by indexX,
indexY and indexZ.
- getApplicationName() - Method in class ch.systemsx.cisd.base.utilities.AbstractBuildAndEnvironmentInfo
-
- getAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Returns the array in flattened form.
- getAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
- getAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
- getAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
- getAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
- getAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
- getAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
- getAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
- getAsObject(int) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Return an object which has the same value as the element of the array specified by
linearIndex.
- getAsObject(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Return an object which has the same value as the element of the array specified by
indices.
- getAsObject(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
- getAsObject(int) - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
- getAsObject(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
- getAsObject(int) - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
- getAsObject(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
- getAsObject(int) - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
- getAsObject(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
- getAsObject(int) - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
- getAsObject(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
- getAsObject(int) - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
- getAsObject(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
- getAsObject(int) - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
- getAsObject(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
- getAsObject(int) - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
- getBlockSize() - Method in class ch.systemsx.cisd.base.unix.Unix.Stat
-
- getByteOrder() - Method in enum ch.systemsx.cisd.base.convert.NativeArrayEncoding
-
Returns the byte order of the array.
- getByteOrder() - Method in class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
-
- getByteOrder() - Method in interface ch.systemsx.cisd.base.io.IRandomAccessFile
-
Gets the byte-order (endiness) of the random access file.
- getByteOrder() - Method in class ch.systemsx.cisd.base.io.RandomAccessFileImpl
-
- getCallableName() - Method in interface ch.systemsx.cisd.base.namedthread.ICallableNameProvider
-
Returns the name to be used for the thread name.
- getCause() - Method in exception ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked
-
- getCause() - Method in exception ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked
-
- getCause() - Method in exception ch.systemsx.cisd.base.exceptions.TimeoutExceptionUnchecked
-
- getChannel() - Method in class ch.systemsx.cisd.base.io.RandomAccessFileImpl
-
- getCompatibleComputerPlatform() - Static method in class ch.systemsx.cisd.base.utilities.OSUtilities
-
- getComponentClass() - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
Returns the component type of this array.
- getComputerPlatform() - Static method in class ch.systemsx.cisd.base.utilities.OSUtilities
-
- getCopyAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Returns a copy of the array in flattened form.
- getCopyAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
- getCopyAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
- getCopyAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
- getCopyAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
- getCopyAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
- getCopyAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
- getCopyAsFlatArray() - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
- getCPUArchitecture() - Method in class ch.systemsx.cisd.base.utilities.AbstractBuildAndEnvironmentInfo
-
- getCPUArchitecture() - Static method in class ch.systemsx.cisd.base.utilities.OSUtilities
-
- getDeviceId() - Method in class ch.systemsx.cisd.base.unix.Unix.Stat
-
- getDimensions() - Method in class ch.systemsx.cisd.base.convert.NativeTaggedArray.NativeArrayTag
-
Resurns the dimensions of the array.
- getEgid() - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the effective gid that determines the permissions of this process.
- getEncoding() - Method in class ch.systemsx.cisd.base.convert.NativeTaggedArray.NativeArrayTag
-
- getEnvironmentInfo() - Method in class ch.systemsx.cisd.base.utilities.AbstractBuildAndEnvironmentInfo
-
Returns version, build number, Java VM, and OS as a List
with four entries.
- getErrorString(int) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the error string for the given errnum.
- getEuid() - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the effective uid that determines the permissions of this process.
- getFD() - Method in class ch.systemsx.cisd.base.io.RandomAccessFileImpl
-
- getFileInfo(String) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the information about fileName.
- getFilePointer() - Method in class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
-
- getFilePointer() - Method in interface ch.systemsx.cisd.base.io.IRandomAccessFile
-
Returns the current offset in this file.
- getFilePointer() - Method in class ch.systemsx.cisd.base.io.RandomAccessFileImpl
-
- getFullVersion() - Method in class ch.systemsx.cisd.base.utilities.AbstractBuildAndEnvironmentInfo
-
Returns the version accompanied by the build number of the software (if known).
- getGid() - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the gid of the user that started this process.
- getGid() - Method in class ch.systemsx.cisd.base.unix.Unix.Group
-
- getGid() - Method in class ch.systemsx.cisd.base.unix.Unix.Password
-
- getGid() - Method in class ch.systemsx.cisd.base.unix.Unix.Stat
-
- getGidForGroupName(String) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the gid of the groupName, or -1
, if no group with this name
exists.
- getGroupMembers() - Method in class ch.systemsx.cisd.base.unix.Unix.Group
-
- getGroupName() - Method in class ch.systemsx.cisd.base.unix.Unix.Group
-
- getGroupPasswordHash() - Method in class ch.systemsx.cisd.base.unix.Unix.Group
-
- getHomeDirectory() - Method in class ch.systemsx.cisd.base.unix.Unix.Password
-
- getIndex() - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray.ArrayEntry
-
The multi-dimensional index of this entry.
- getInode(String) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the inode for the fileName.
- getInode() - Method in class ch.systemsx.cisd.base.unix.Unix.Stat
-
- getJavaVM() - Method in class ch.systemsx.cisd.base.utilities.AbstractBuildAndEnvironmentInfo
-
- getLastAccess() - Method in class ch.systemsx.cisd.base.unix.Unix.Stat
-
- getLastError() - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the last error that occurred in this class.
- getLastModified() - Method in class ch.systemsx.cisd.base.unix.Unix.Stat
-
- getLastStatusChange() - Method in class ch.systemsx.cisd.base.unix.Unix.Stat
-
- getLength(int[]) - Static method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Returns the one-dimensional length of the multi-dimensional array defined by
dimensions.
- getLength(int[], int) - Static method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Returns the one-dimensional length of the multi-dimensional array defined by
dimensions.
- getLength(long[]) - Static method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Returns the one-dimensional length of the multi-dimensional array defined by
dimensions.
- getLength(long[], long) - Static method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Returns the one-dimensional length of the multi-dimensional array defined by
dimensions.
- getLinearIndex() - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray.ArrayEntry
-
The linear index of this entry.
- getLinkInfo(String) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the information about linkName.
- getLinkInfo(String, boolean) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the information about linkName.
- getLinkType() - Method in class ch.systemsx.cisd.base.unix.Unix.Stat
-
- getMessage() - Method in exception ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel
-
- getNativeByteOrder() - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Returns the native byte order of the host running this JRE.
- getNumberOfBlocks() - Method in class ch.systemsx.cisd.base.unix.Unix.Stat
-
- getNumberOfHardLinks(String) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the number of hard links for the fileName.
- getNumberOfHardLinks() - Method in class ch.systemsx.cisd.base.unix.Unix.Stat
-
- getOS() - Method in class ch.systemsx.cisd.base.utilities.AbstractBuildAndEnvironmentInfo
-
- getOSName() - Static method in class ch.systemsx.cisd.base.utilities.OSUtilities
-
- getOSPath() - Static method in class ch.systemsx.cisd.base.utilities.OSUtilities
-
- getPasswordHash() - Method in class ch.systemsx.cisd.base.unix.Unix.Password
-
- getPermissions() - Method in class ch.systemsx.cisd.base.unix.Unix.Stat
-
- getPid() - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the process identifier of the current process.
- getRevision() - Method in class ch.systemsx.cisd.base.utilities.AbstractBuildAndEnvironmentInfo
-
- getRunnableName() - Method in interface ch.systemsx.cisd.base.namedthread.IRunnableNameProvider
-
Returns the name to be used for the thread name.
- getSafeOSPath(boolean) - Static method in class ch.systemsx.cisd.base.utilities.OSUtilities
-
- getSafeOSPath() - Static method in class ch.systemsx.cisd.base.utilities.OSUtilities
-
- getShell() - Method in class ch.systemsx.cisd.base.unix.Unix.Password
-
- getSize() - Method in class ch.systemsx.cisd.base.unix.Unix.Stat
-
- getSizeInBytes() - Method in enum ch.systemsx.cisd.base.convert.NativeArrayEncoding
-
Returns the size of one element in bytes.
- getThreadCount() - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadFactory
-
- getThreadFactory() - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadPoolExecutor
-
- getUid() - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the uid of the user that started this process.
- getUid() - Method in class ch.systemsx.cisd.base.unix.Unix.Password
-
- getUid() - Method in class ch.systemsx.cisd.base.unix.Unix.Stat
-
- getUidForUserName(String) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the uid of the userName, or -1
, if no user with this name
exists.
- getUserFullName() - Method in class ch.systemsx.cisd.base.unix.Unix.Password
-
- getUserName() - Method in class ch.systemsx.cisd.base.unix.Unix.Password
-
- getUsername() - Static method in class ch.systemsx.cisd.base.utilities.OSUtilities
-
- getValue() - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray.ArrayEntry
-
The value of this entry.
- getVersion() - Method in class ch.systemsx.cisd.base.utilities.AbstractBuildAndEnvironmentInfo
-
- ICallableNameProvider - Interface in ch.systemsx.cisd.base.namedthread
-
A name provider for a Callable
.
- IErrorStrategy - Interface in ch.systemsx.cisd.base.exceptions
-
A strategy role for dealing with errors.
- IImageTransformer - Interface in ch.systemsx.cisd.base.image
-
Interface for classes which can transform images.
- IImageTransformerFactory - Interface in ch.systemsx.cisd.base.image
-
- IInputStream - Interface in ch.systemsx.cisd.base.io
-
An interface for InputStream
.
- incNumberOfHyperRows(int) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Increase the number of hyper-rows by count.
- INSTANCE - Static variable in class ch.systemsx.cisd.base.BuildAndEnvironmentInfo
-
- INT_SIZE - Static variable in class ch.systemsx.cisd.base.convert.NativeData
-
Size of an int
value in byte
s.
- InterruptedExceptionUnchecked - Exception in ch.systemsx.cisd.base.exceptions
-
Exception that signals that whoever gets it should stop its current work.
- InterruptedExceptionUnchecked() - Constructor for exception ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked
-
- InterruptedExceptionUnchecked(InterruptedException) - Constructor for exception ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked
-
- intToByte(int[], NativeData.ByteOrder, int, int) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Converts a int[]
array to a byte[]
array.
- intToByte(int[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Converts a int[]
array to a byte[]
array.
- IOExceptionUnchecked - Exception in ch.systemsx.cisd.base.exceptions
-
- IOExceptionUnchecked(IOException) - Constructor for exception ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked
-
Returns an IOExceptionUnchecked
from a IOException
.
- IOExceptionUnchecked(String) - Constructor for exception ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked
-
Returns an IOExceptionUnchecked
from a newly created IOException
with given msg.
- IOExceptionUnchecked(Throwable) - Constructor for exception ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked
-
Returns an IOExceptionUnchecked
from newly created IOException
with
given throwable as its cause.
- IOutputStream - Interface in ch.systemsx.cisd.base.io
-
An interface for OutputStream
.
- IRandomAccessFile - Interface in ch.systemsx.cisd.base.io
-
The interface of RandomAccessFile
.
- IRunnableNameProvider - Interface in ch.systemsx.cisd.base.namedthread
-
A name provider for a Runnable
.
- isAddPoolName() - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadFactory
-
- isCleanSources() - Method in class ch.systemsx.cisd.base.utilities.AbstractBuildAndEnvironmentInfo
-
- isCreateDaemonThreads() - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadFactory
-
- isFloatingPoint() - Method in enum ch.systemsx.cisd.base.convert.NativeArrayEncoding
-
Returns true
, if the encoded array is a float array.
- isInteger() - Method in enum ch.systemsx.cisd.base.convert.NativeArrayEncoding
-
Returns true
, if the encoded array is an int array.
- isMacOS() - Static method in class ch.systemsx.cisd.base.utilities.OSUtilities
-
- isOperational() - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns true
, if the native library has been loaded successfully and the link
utilities are operational, false
otherwise.
- isProcessRunning(int) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns
true
, if the process with
pid is currently running and
false
, if it is not running or if process detection is not available (
Unix.canDetectProcesses()
== false
).
- isRoot() - Static method in class ch.systemsx.cisd.base.utilities.OSUtilities
-
- isSymbolicLink(String) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns true
if fileName is a symbolic link and false
otherwise.
- isSymbolicLink() - Method in class ch.systemsx.cisd.base.unix.Unix.Stat
-
Returns true
, if this link is a symbolic link.
- IStreamingImageTransformer - Interface in ch.systemsx.cisd.base.image
-
Interface for classes which can transform images in a streaming mode.
- IStreamingImageTransformerFactory - Interface in ch.systemsx.cisd.base.image
-
- isUnix() - Static method in class ch.systemsx.cisd.base.utilities.OSUtilities
-
- isUseNativeLib() - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Returns true
, if this class uses the native library and false
otherwise.
- isWindows() - Static method in class ch.systemsx.cisd.base.utilities.OSUtilities
-
- ISynchronizable - Interface in ch.systemsx.cisd.base.io
-
A roles that allows to synchronize a resource with an underlying resource.
- iterator() - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
- S_IRGRP - Static variable in class ch.systemsx.cisd.base.unix.Unix
-
read by group
- S_IROTH - Static variable in class ch.systemsx.cisd.base.unix.Unix
-
read by others
- S_IRUSR - Static variable in class ch.systemsx.cisd.base.unix.Unix
-
read by owner
- S_ISGID - Static variable in class ch.systemsx.cisd.base.unix.Unix
-
set group ID on execution
- S_ISUID - Static variable in class ch.systemsx.cisd.base.unix.Unix
-
set user ID on execution
- S_ISVTX - Static variable in class ch.systemsx.cisd.base.unix.Unix
-
sticky bit
- S_IWGRP - Static variable in class ch.systemsx.cisd.base.unix.Unix
-
write by group
- S_IWOTH - Static variable in class ch.systemsx.cisd.base.unix.Unix
-
write by others
- S_IWUSR - Static variable in class ch.systemsx.cisd.base.unix.Unix
-
write by owner
- S_IXGRP - Static variable in class ch.systemsx.cisd.base.unix.Unix
-
execute/search by group
- S_IXOTH - Static variable in class ch.systemsx.cisd.base.unix.Unix
-
execute/search by others
- S_IXUSR - Static variable in class ch.systemsx.cisd.base.unix.Unix
-
execute/search by owner
- seek(long) - Method in class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
-
- seek(long) - Method in interface ch.systemsx.cisd.base.io.IRandomAccessFile
-
Sets the file-pointer offset, measured from the beginning of this file, at which the next
read or write occurs.
- seek(long) - Method in class ch.systemsx.cisd.base.io.RandomAccessFileImpl
-
- set(T, int...) - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
Sets the value of array at the position defined by indices.
- set(T, int) - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
Sets the value of a one-dimension array at the position defined by
index.
- set(T, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
Sets the value of a two-dimensional array at the position defined by
indexX and indexY.
- set(T, int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
Sets the value of a three-dimensional array at the position defined by
indexX, indexY and indexZ.
- set(byte, int...) - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
Sets the value of array at the position defined by indices.
- set(byte, int) - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
Sets the value of a one-dimension array at the position defined by
index.
- set(byte, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
Sets the value of a two-dimensional array at the position defined by
indexX and indexY.
- set(byte, int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
Sets the value of a three-dimensional array at the position defined by
indexX, indexY and indexZ.
- set(double, int...) - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
Sets the value of array at the position defined by indices.
- set(double, int) - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
Sets the value of a one-dimension array at the position defined by
index.
- set(double, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
Sets the value of a two-dimensional array at the position defined by
indexX and indexY.
- set(double, int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
Sets the value of a three-dimensional array at the position defined by
indexX, indexY and indexZ.
- set(float, int...) - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
Sets the value of array at the position defined by indices.
- set(float, int) - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
Sets the value of a one-dimension array at the position defined by
index.
- set(float, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
Sets the value of a two-dimensional array at the position defined by
indexX and indexY.
- set(float, int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
Sets the value of a three-dimensional array at the position defined by
indexX, indexY and indexZ.
- set(int, int...) - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
Sets the value of array at the position defined by indices.
- set(int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
Sets the value of a one-dimension array at the position defined by
index.
- set(int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
Sets the value of a two-dimensional array at the position defined by
indexX and indexY.
- set(int, int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
Sets the value of a three-dimensional array at the position defined by
indexX, indexY and indexZ.
- set(long, int...) - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
Sets the value of array at the position defined by indices.
- set(long, int) - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
Sets the value of a one-dimension array at the position defined by
index.
- set(long, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
Sets the value of a two-dimensional array at the position defined by
indexX and indexY.
- set(long, int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
Sets the value of a three-dimensional array at the position defined by
indexX, indexY and indexZ.
- set(short, int...) - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
Sets the value of array at the position defined by indices.
- set(short, int) - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
Sets the value of a one-dimension array at the position defined by
index.
- set(short, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
Sets the value of a two-dimensional array at the position defined by
indexX and indexY.
- set(short, int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
Sets the value of a three-dimensional array at the position defined by
indexX, indexY and indexZ.
- setAccessMode(String, short) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Sets the access mode of filename to the specified mode value.
- setAddPoolName(boolean) - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadFactory
-
- setByteOrder(ByteOrder) - Method in class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
-
- setByteOrder(ByteOrder) - Method in interface ch.systemsx.cisd.base.io.IRandomAccessFile
-
Sets the byte-order (endiness) of the random access file.
- setByteOrder(ByteOrder) - Method in class ch.systemsx.cisd.base.io.RandomAccessFileImpl
-
- setCreateDaemonThreads(boolean) - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadFactory
-
- setLength(long) - Method in class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
-
- setLength(long) - Method in interface ch.systemsx.cisd.base.io.IRandomAccessFile
-
Sets the length of this file.
- setLength(long) - Method in class ch.systemsx.cisd.base.io.RandomAccessFileImpl
-
- setOwner(String, int, int) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Sets the owner of filename to the specified uid and gid
values.
- setRunnableName(String) - Method in class ch.systemsx.cisd.base.namedthread.PoolNameThread
-
Sets the thread's name to the runnableName, possibly adding the pool name if
addPoolName has been set to true
in the constructor.
- setThreadFactory(NamingThreadFactory) - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadPoolExecutor
-
Sets the thread factory of this pool executor.
- setThreadFactory(ThreadFactory) - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadPoolExecutor
-
- setToObject(T, int...) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Sets the element of the array specified by indices to the particular
value.
- setToObject(T, int) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Sets the element of the array specified by linearIndex to the particular
value.
- setToObject(T, int...) - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
- setToObject(T, int) - Method in class ch.systemsx.cisd.base.mdarray.MDArray
-
- setToObject(Byte, int...) - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
- setToObject(Byte, int) - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
- setToObject(Double, int...) - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
- setToObject(Double, int) - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
- setToObject(Float, int...) - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
- setToObject(Float, int) - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
- setToObject(Integer, int...) - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
- setToObject(Integer, int) - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
- setToObject(Long, int...) - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
- setToObject(Long, int) - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
- setToObject(Short, int...) - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
- setToObject(Short, int) - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
- setUp() - Method in class ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase
-
- SHORT_SIZE - Static variable in class ch.systemsx.cisd.base.convert.NativeData
-
Size of a short
value in byte
s.
- shortToByte(short[], NativeData.ByteOrder, int, int) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Converts a short[]
array to a byte[]
array.
- shortToByte(short[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
-
Converts a short[]
array to a byte[]
array.
- size - Variable in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
- size(int) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Returns the extent of the array along its dim-th axis.
- size() - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Returns the number of elements in the array.
- skip(long) - Method in class ch.systemsx.cisd.base.io.AdapterIInputStreamToInputStream
-
- skip(long) - Method in class ch.systemsx.cisd.base.io.AdapterInputStreamToIInputStream
-
- skip(long) - Method in class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
-
- skip(long) - Method in interface ch.systemsx.cisd.base.io.IInputStream
-
- skip(long) - Method in class ch.systemsx.cisd.base.io.RandomAccessFileImpl
-
- skipBytes(int) - Method in class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
-
- skipBytes(int) - Method in interface ch.systemsx.cisd.base.io.IRandomAccessFile
-
- skipBytes(int) - Method in class ch.systemsx.cisd.base.io.RandomAccessFileImpl
-
- StopException - Exception in ch.systemsx.cisd.base.exceptions
-
An exception that signals that Thread.stop()
has been called on the current thread.
- StopException() - Constructor for exception ch.systemsx.cisd.base.exceptions.StopException
-
- submit(Runnable) - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadPoolExecutor
-
- submit(Runnable, T) - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadPoolExecutor
-
- submit(Callable<T>) - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadPoolExecutor
-
- synchronize() - Method in class ch.systemsx.cisd.base.io.AdapterOutputStreamToIOutputStream
-
- synchronize() - Method in class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
-
- synchronize() - Method in interface ch.systemsx.cisd.base.io.IOutputStream
-
- synchronize() - Method in interface ch.systemsx.cisd.base.io.ISynchronizable
-
Performs a synchronization of the resource.
- synchronize() - Method in class ch.systemsx.cisd.base.io.RandomAccessFileImpl
-
- TARGETS_DIRECTORY - Static variable in class ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase
-
- TimeoutExceptionUnchecked - Exception in ch.systemsx.cisd.base.exceptions
-
Exception thrown when a blocking operation times out.
- TimeoutExceptionUnchecked() - Constructor for exception ch.systemsx.cisd.base.exceptions.TimeoutExceptionUnchecked
-
- TimeoutExceptionUnchecked(String) - Constructor for exception ch.systemsx.cisd.base.exceptions.TimeoutExceptionUnchecked
-
- TimeoutExceptionUnchecked(TimeoutException) - Constructor for exception ch.systemsx.cisd.base.exceptions.TimeoutExceptionUnchecked
-
- toByteArray(float[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in native byte order.
- toByteArray(float[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in given byte order.
- toByteArray(MDFloatArray) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in native byte order.
- toByteArray(MDFloatArray, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in given byte order.
- toByteArray(double[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in native byte order.
- toByteArray(double[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in given byte order.
- toByteArray(MDDoubleArray) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in native byte order.
- toByteArray(MDDoubleArray, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in given byte order.
- toByteArray(short[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in native byte order.
- toByteArray(short[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in given byte order.
- toByteArray(MDShortArray) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in native byte order.
- toByteArray(MDShortArray, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in given byte order.
- toByteArray(int[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in native byte order.
- toByteArray(int[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in given byte order.
- toByteArray(MDIntArray) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in native byte order.
- toByteArray(MDIntArray, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in given byte order.
- toByteArray(long[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in native byte order.
- toByteArray(long[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in given byte order.
- toByteArray(MDLongArray) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in native byte order.
- toByteArray(MDLongArray, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Converts data into a tagged array in given byte order.
- toInt(long[]) - Static method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Converts the dimensions from long[]
to int[]
.
- toLong(int[]) - Static method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
Converts the dimensions from int[]
to long[]
.
- toMatrix() - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
-
Creates and returns a matrix from a two-dimensional array.
- toMatrix() - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
-
Creates and returns a matrix from a two-dimensional array.
- toMatrix() - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
-
Creates and returns a matrix from a two-dimensional array.
- toMatrix() - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
-
Creates and returns a matrix from a two-dimensional array.
- toMatrix() - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
-
Creates and returns a matrix from a two-dimensional array.
- toMatrix() - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
-
Creates and returns a matrix from a two-dimensional array.
- toString() - Method in exception ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel
-
- toString() - Method in class ch.systemsx.cisd.base.io.AdapterIInputStreamToInputStream
-
- toString() - Method in class ch.systemsx.cisd.base.io.AdapterInputStreamToIInputStream
-
- toString() - Method in class ch.systemsx.cisd.base.io.AdapterIOutputStreamToOutputStream
-
- toString() - Method in class ch.systemsx.cisd.base.io.AdapterOutputStreamToIOutputStream
-
- toString() - Method in class ch.systemsx.cisd.base.io.RandomAccessFileImpl
-
- toString() - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
-
- toString() - Method in class ch.systemsx.cisd.base.utilities.AbstractBuildAndEnvironmentInfo
-
Returns version, build number, Java VM, and OS in a four-liner as one String
.
- transform(BufferedImage) - Method in interface ch.systemsx.cisd.base.image.IImageTransformer
-
Transforms the specified image.
- transform(InputStream) - Method in interface ch.systemsx.cisd.base.image.IStreamingImageTransformer
-
Transforms the image provided as the input stream.
- transformToPNG(InputStream) - Method in interface ch.systemsx.cisd.base.image.IStreamingImageTransformer
-
Transforms the image provided as the input stream.
- transformToPNGStream(InputStream, OutputStream) - Method in interface ch.systemsx.cisd.base.image.IStreamingImageTransformer
-
Transforms the image provided as the input stream.
- tryCopyNativeLibraryToTempFile(String, boolean) - Static method in class ch.systemsx.cisd.base.utilities.NativeLibraryUtilities
-
Tries to copy a native library which is available as a resource to a temporary file.
- tryCopyResourceToFile(String, Path, RandomAccessFile, boolean, String) - Static method in class ch.systemsx.cisd.base.utilities.ResourceUtilities
-
Tries to copy the resource with the given name to a file on the file system.
- tryCopyResourceToTempFile(String, String, String) - Static method in class ch.systemsx.cisd.base.utilities.ResourceUtilities
-
Tries to copy the resource with the given name to a temporary file.
- tryCopyResourceToTempFile(String, String, String, boolean) - Static method in class ch.systemsx.cisd.base.utilities.ResourceUtilities
-
Tries to copy the resource with the given name to a temporary file.
- tryCopyResourceToTempFile(String, String, String, boolean, boolean, String) - Static method in class ch.systemsx.cisd.base.utilities.ResourceUtilities
-
Tries to copy the resource with the given name to a temporary file.
- tryGetArrayTag(byte[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Returns the array tag of the native tagged array encoded in data, or
null
, if data does not encode a native tagged array.
- tryGetEncoding(byte[]) - Static method in enum ch.systemsx.cisd.base.convert.NativeArrayEncoding
-
Returns the encoding for the given byteArr, or null
, if
byteArr is not an encoded array.
- tryGetFileInfo(String) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the information about fileName, or NullPointerException
, if the
information could not be obtained, e.g.
- tryGetGroupByGid(int) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the
Unix.Group
for the given
gid, or
null
, if no group
with that gid exists.
- tryGetGroupByName(String) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the
Unix.Group
for the given
groupName, or
null
, if no
group with that name exists.
- tryGetGroupNameForGid(int) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the name of the group identified by gid, or null
, if no group
with that gid exists.
- tryGetLinkInfo(String) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the information about linkName, or NullPointerException
, if the
information could not be obtained, e.g.
- tryGetLinkInfo(String, boolean) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the information about linkName, or null
if the information
can not be obtained, e.g.
- tryGetSymbolicLink() - Method in class ch.systemsx.cisd.base.unix.Unix.Stat
-
- tryGetUserByName(String) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the
Unix.Password
for the given
userName, or
null
, if no
user with that name exists.
- tryGetUserByUid(int) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the
Unix.Password
for the given
userName, or
null
, if no
user with that name exists.
- tryGetUserNameForUid(int) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the name of the user identified by uid.
- tryReadSymbolicLink(String) - Static method in class ch.systemsx.cisd.base.unix.Unix
-
Returns the value of the symbolik link linkName, or null
, if
linkName is not a symbolic link.
- tryToDoubleArray(byte[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Returns the tagged array
data as a
MDDoubleArray
or
null
, if
data is not a tagged (multi-dimensional) double array.
- tryToDoubleArray1D(byte[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Returns the tagged array data as a double array or null
, if
data is not a tagged 1D double array.
- tryToFloatArray(byte[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Returns the tagged array
data as a
MDFloatArray
or
null
, if
data is not a tagged (multi-dimensional) float array.
- tryToFloatArray1D(byte[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Returns the tagged array data as a float array or null
, if
data is not a tagged 1D float array.
- tryToIntArray(byte[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Returns the tagged array
data as a
MDIntArray
or
null
, if
data is not a tagged (multi-dimensional) int array.
- tryToIntArray1D(byte[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Returns the tagged array data as an int array or null
, if
data is not a tagged 1D int array.
- tryToLongArray(byte[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Returns the tagged array
data as a
MDLongArray
or
null
, if
data is not a tagged (multi-dimensional) long array.
- tryToLongArray1D(byte[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Returns the tagged array data as a long array or null
, if
data is not a tagged 1D long array.
- tryToShortArray(byte[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Returns the tagged array
data as a
MDShortArray
or
null
, if
data is not a tagged (multi-dimensional) short array.
- tryToShortArray1D(byte[]) - Static method in class ch.systemsx.cisd.base.convert.NativeTaggedArray
-
Returns the tagged array data as a short array or null
, if
data is not a tagged 1D short array.