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A

AbstractApiJsonServiceExporter - Class in ch.systemsx.cisd.openbis.common.api.server
Abstract super class of all classes make an API available via JsonServiceExporter.
AbstractApiJsonServiceExporter() - Constructor for class ch.systemsx.cisd.openbis.common.api.server.AbstractApiJsonServiceExporter
 
AbstractApiServiceExporter - Class in ch.systemsx.cisd.openbis.common.api.server
Abstract super class of all classes make an API available via HttpInvokerServiceExporter.
AbstractApiServiceExporter() - Constructor for class ch.systemsx.cisd.openbis.common.api.server.AbstractApiServiceExporter
 
AbstractBuildAndEnvironmentInfo - Class in ch.systemsx.cisd.base.utilities
Abstract of all classes providing build and environment information.
AbstractBuildAndEnvironmentInfo(String) - Constructor for class ch.systemsx.cisd.base.utilities.AbstractBuildAndEnvironmentInfo
 
AbstractClient - Class in ch.systemsx.cisd.openbis.dss.client.api.cli
 
AbstractClient(IExitHandler, ICommandFactory) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.cli.AbstractClient
 
AbstractCollectionView<T> - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view
 
AbstractCollectionView(Collection<T>, Integer, Integer) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view.AbstractCollectionView
 
AbstractCommand<T extends GlobalArguments> - Class in ch.systemsx.cisd.openbis.dss.client.api.cli
 
AbstractCommand(T) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.cli.AbstractCommand
 
AbstractCommandFactory - Class in ch.systemsx.cisd.openbis.dss.client.api.cli
 
AbstractCommandFactory() - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.cli.AbstractCommandFactory
 
AbstractCompositeSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
AbstractCompositeSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.AbstractCompositeSearchCriteria
 
AbstractDataSetAccessPredicate<T,D> - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization
Abstract super class of all implementations checking data set access.
AbstractDataSetAccessPredicate() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.AbstractDataSetAccessPredicate
 
AbstractDataSetSearchCriteria<T extends AbstractDataSetSearchCriteria<T>> - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search
 
AbstractDateObjectValue - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
AbstractDateValue - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
AbstractEntityPickerDialog - Class in ch.systemsx.cisd.openbis.dss.client.api.gui
 
AbstractEntityPickerDialog(JFrame, String, DataSetUploadClientModel) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.AbstractEntityPickerDialog
 
AbstractEntityPickerPanel - Class in ch.systemsx.cisd.openbis.dss.client.api.gui
 
AbstractEntityPickerPanel(JFrame) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.AbstractEntityPickerPanel
 
AbstractEntitySearchCriteria<ID extends IObjectId> - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
AbstractEntitySearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.AbstractEntitySearchCriteria
 
AbstractEntitySearchResultLocation - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Abstract super class of SearchDomain results based of openBIS entities.
AbstractEntitySearchResultLocation() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AbstractEntitySearchResultLocation
 
AbstractEntityTypeSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.search
 
AbstractEntityTypeSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.search.AbstractEntityTypeSearchCriteria
 
AbstractExecutionOptionsWithParameters<EO extends AbstractExecutionOptionsWithParameters<EO,V>,V> - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute
 
AbstractExecutionOptionsWithParameters() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute.AbstractExecutionOptionsWithParameters
 
AbstractFieldSearchCriteria<T> - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
AbstractFieldSearchCriteria(String, SearchFieldType) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.AbstractFieldSearchCriteria
 
AbstractFileSystemTestCase - Class in ch.systemsx.cisd.base.tests
An abstract test case which accesses the file system.
AbstractFileSystemTestCase() - Constructor for class ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase
 
AbstractFileSystemTestCase(boolean) - Constructor for class ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase
 
AbstractFormatSelectionCriterion - Class in ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto
Abstract super class of IImageRepresentationFormatSelectionCriterion which accepting matching ImageRepresentationFormat instance individually.
AbstractFormatSelectionCriterion() - Constructor for class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.AbstractFormatSelectionCriterion
 
AbstractJavaDataSetRegistrationDropboxV2 - Class in ch.systemsx.cisd.etlserver.registrator.api.v2
An abstract superclass for V2 dropboxes implemented in java
AbstractJavaDataSetRegistrationDropboxV2() - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.AbstractJavaDataSetRegistrationDropboxV2
 
AbstractNumberValue - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
AbstractNumberValue(Number) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.AbstractNumberValue
 
AbstractObjectDeletionOptions<T extends AbstractObjectDeletionOptions<T>> - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion
 
AbstractObjectDeletionOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.AbstractObjectDeletionOptions
 
AbstractObjectSearchCriteria<ID extends IObjectId> - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
AbstractObjectSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.AbstractObjectSearchCriteria
 
AbstractOperationExecutionOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.operation
 
AbstractOperationExecutionOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.AbstractOperationExecutionOptions
 
AbstractSampleSearchCriteria<T extends AbstractSampleSearchCriteria<T>> - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.search
 
AbstractSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
AbstractSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.AbstractSearchCriteria
 
AbstractSearchDomainService - Class in ch.systemsx.cisd.openbis.dss.generic.server.api.v2.sequencedatabases
Abstract super class of all ISearchDomainService implementations which get the label from the property PluginTaskFactory.LABEL_PROPERTY_NAME.
AbstractSearchDomainService(Properties, File) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.server.api.v2.sequencedatabases.AbstractSearchDomainService
 
AbstractStreamSupportingApiServiceExporter - Class in ch.systemsx.cisd.openbis.common.api.server
Abstract super class of all classes make an API available via StreamSupportingHttpInvokerServiceExporter.
AbstractStreamSupportingApiServiceExporter() - Constructor for class ch.systemsx.cisd.openbis.common.api.server.AbstractStreamSupportingApiServiceExporter
 
AbstractStringValue - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
AbstractStringValue(String) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.AbstractStringValue
 
AbstractSwingGUI - Class in ch.systemsx.cisd.openbis.dss.client.api.gui
 
AbstractSwingGUI(DssCommunicationState) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.AbstractSwingGUI
Instantiates the Swing GUI with the necessary information to communicate with CIFEX.
AbstractThumbnailsConfiguration - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.thumbnails
 
AbstractThumbnailsConfiguration() - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.thumbnails.AbstractThumbnailsConfiguration
 
AbstractThumbnailsConfiguration - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.thumbnails
This class is obsolete, and should not be used.
AbstractThumbnailsConfiguration() - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.thumbnails.AbstractThumbnailsConfiguration
 
AbstractTransactionState<T extends ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation> - Class in ch.systemsx.cisd.etlserver.registrator.api.v1.impl
Abstract superclass for the states a DataSetRegistrationTransaction can be in.
AbstractTransactionState(DataSetRegistrationTransaction<T>) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.AbstractTransactionState
 
AbstractTransactionState<T extends ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation> - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
Abstract superclass for the states a DataSetRegistrationTransaction can be in.
AbstractTransactionState(DataSetRegistrationTransaction<T>) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AbstractTransactionState
 
AbstractTransactionState.LiveTransactionRollbackDelegate - Class in ch.systemsx.cisd.etlserver.registrator.api.v1.impl
Rollback stack delegate that checks whether the given filesystem is accessible before letting the rollback continue.
AbstractTransactionState.LiveTransactionRollbackDelegate - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
Rollback stack delegate that checks whether the given filesystem is accessible before letting the rollback continue.
AbstractTreeEntityPickerDialog - Class in ch.systemsx.cisd.openbis.dss.client.api.gui
Abstract super class of all entity picker dialogs based on JTree.
AbstractTreeEntityPickerDialog(JFrame, String, NewDataSetDTO.DataSetOwnerType, DataSetUploadClientModel) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.AbstractTreeEntityPickerDialog
 
AbstractWebStartClientServingServlet - Class in ch.systemsx.cisd.openbis.generic.client.api.gui
A servlet the generates the JNLP document for serving a web-start client.
AbstractWebStartClientServingServlet() - Constructor for class ch.systemsx.cisd.openbis.generic.client.api.gui.AbstractWebStartClientServingServlet
 
accept(ImageRepresentationFormat) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.AbstractFormatSelectionCriterion
Returns true if the specified ImageRepresentationFormat instance is accepted by this criterion.
accept(ImageRepresentationFormat) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ColorDepthCriterion
 
accept(ImageRepresentationFormat) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FileTypeCriterion
 
accept(ImageRepresentationFormat) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.OriginalCriterion
 
actionPerformed(ActionEvent) - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.DataSetPickerPanel
 
actionPerformed(ActionEvent) - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.ExperimentPickerPanel
 
actionPerformed(ActionEvent) - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.SamplePickerPanel
 
adaptCapacityHyperRows() - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
 
adaptCapacityHyperRows() - Method in class ch.systemsx.cisd.base.mdarray.MDArray
 
adaptCapacityHyperRows() - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
 
adaptCapacityHyperRows() - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
 
adaptCapacityHyperRows() - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
 
adaptCapacityHyperRows() - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
 
adaptCapacityHyperRows() - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
 
adaptCapacityHyperRows() - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
 
AdapterIInputStreamToInputStream - Class in ch.systemsx.cisd.base.io
An adapter for IInputStream that extends InputStream.
AdapterIInputStreamToInputStream(IInputStream) - Constructor for class ch.systemsx.cisd.base.io.AdapterIInputStreamToInputStream
 
AdapterInputStreamToIInputStream - Class in ch.systemsx.cisd.base.io
An adapter for InputStream that implements IInputStream.
AdapterInputStreamToIInputStream(InputStream) - Constructor for class ch.systemsx.cisd.base.io.AdapterInputStreamToIInputStream
 
AdapterIOutputStreamToOutputStream - Class in ch.systemsx.cisd.base.io
An adapter for IOutputStream that extends OutputStream.
AdapterIOutputStreamToOutputStream(IOutputStream) - Constructor for class ch.systemsx.cisd.base.io.AdapterIOutputStreamToOutputStream
 
AdapterOutputStreamToIOutputStream - Class in ch.systemsx.cisd.base.io
An adapter for OutputStream that implements IOutputStream.
AdapterOutputStreamToIOutputStream(OutputStream) - Constructor for class ch.systemsx.cisd.base.io.AdapterOutputStreamToIOutputStream
 
add(T) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view.AbstractCollectionView
 
add(int, T) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view.ListView
 
add(ADD...) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.update.ListUpdateValue
 
add(Throwable) - Method in class ch.systemsx.cisd.etlserver.registrator.DistinctExceptionsCollection
Adds exception to the list of exceptions and returns the integer denoting how many similar exceptions are already in this collection.
add(MutableTreeNode) - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.tree.FilterableMutableTreeNode
 
add(MutableTreeNode, boolean) - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.tree.FilterableMutableTreeNode
 
add(Project) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
 
add(String, Role) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SpaceWithProjectsAndRoleAssignments
 
addAction(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.basic.dto.api.IManagedUiDescription
Adds an action with given name to actions that can be performed in the user interface for modification of the managed property.
addActionListener(ActionListener) - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.AbstractEntityPickerPanel
 
addAdHocVocabularyTerm(TechId, String, String, String, Long) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
addAdHocVocabularyTerm(Long, NewVocabularyTerm) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
addAdHocVocabularyTerm(TechId, String, String, String, Long) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
addAdHocVocabularyTerm(Long, NewVocabularyTerm) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IOpenbisServiceFacade
Adds new ad-hoc terms to a vocabulary starting from specified ordinal + 1.
addAll(Collection<? extends T>) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view.AbstractCollectionView
 
addAll(int, Collection<? extends T>) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view.ListView
 
addAttachment(String, String, String, byte[]) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IExperimentUpdatable
Add a new attachment to this sample.
addAttachment(String, String, String, byte[]) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.Sample
 
addAttachment(String, String, String, byte[]) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IProject
Add a new attachment to this sample.
addAttachment(String, String, String, byte[]) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.ISample
Add a new attachment to this sample.
addAttachment(String, String, String, byte[]) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IExperimentUpdatable
Add a new attachment to this sample.
addAttachment(String, String, String, byte[]) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Sample
 
addAttachment(String, String, String, byte[]) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IProject
Add a new attachment to this sample.
addAttachment(String, String, String, byte[]) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.ISample
Add a new attachment to this sample.
addAttribute(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.IElement
adds an attribute, replacing any previously existing attributes with the same key.
addBinding(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.basic.dto.api.IManagedUiTableAction
Adds a binding between input field and table column.
addChild(DataSet) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
addChildren(IElement...) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.IElement
appends a list of children to this children elements list.
addClass(String, Class<?>) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.mapping.JsonStaticClassValueToClassObjectsMapping
 
addDataSet(IDataSetId) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
 
addDirectory(String, long) - Method in interface ch.systemsx.cisd.openbis.dss.generic.server.fs.api.file.IDirectoryResponse
Adds a directory entry to the listing with specified last modified timestamp.
addDirectory(String, Date) - Method in interface ch.systemsx.cisd.openbis.dss.generic.server.fs.api.file.IDirectoryResponse
Adds a directory entry to the listing with specified last modified timestamp.
addDirectory(String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.server.fs.api.file.IDirectoryResponse
Adds a directory entry to the listing with dss startup time as last modified timestamp
addEntity(IMetaprojectContent) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IMetaproject
add assignments to this metaproject
addEntity(IMetaprojectContent) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.Metaproject
 
addEntity(IMetaprojectContent) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IMetaproject
add assignments to this metaproject
addEntity(IMetaprojectContent) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Metaproject
 
addExecuteOnAccessMethod(IHierarchicalContentExecuteOnAccess) - Method in class ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.HierarchicalContentProxy
 
addExperiment(IExperimentId) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
 
addFetchOption(String, FetchOptions<?>) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.FetchOptionsToStringBuilder
 
addFile(String, long, long) - Method in interface ch.systemsx.cisd.openbis.dss.generic.server.fs.api.file.IDirectoryResponse
Adds a file entry to the listing with specified size and modification date.
addFile(String, IHierarchicalContentNode) - Method in interface ch.systemsx.cisd.openbis.dss.generic.server.fs.api.file.IDirectoryResponse
Adds a file entry to the listing with size and modification date from the specified node
addFixedIntensityRangeForAllImages(String, int, int) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.SimpleImageDataConfig
Add fixed levels for the common intensity range transformation of the given cannel for all images.
addFocusListener(FocusListener) - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.AbstractEntityPickerPanel
 
addFullHeader(String...) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.ISimpleTableModelBuilderAdaptor
A convenience method for adding complete header with columns with specified titles and default column width 150.
addFullRow(String...) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.ISimpleTableModelBuilderAdaptor
A convenience method for adding a row with specified values.
addGeneratedImageRepresentationWithoutEnlargingWithResolution(String) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.SimpleImageDataConfig
Registers a request for an alternate image representation to be generated based on the original image.
addGeneratedImageRepresentationWithResolution(String) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.SimpleImageDataConfig
Registers a request for an alternate image representation to be generated based on the original image.
addGeneratedImageRepresentationWithScale(double) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.SimpleImageDataConfig
Registers a request for an alternate image representation to be generated based on the original image.
addHeader(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.ISimpleTableModelBuilderAdaptor
Adds header column with specified title and default column width 150.
addHeader(String, int) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.ISimpleTableModelBuilderAdaptor
Adds header column with specified title and specified default column width.
addHeader(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.ISimpleTableModelBuilderAdaptor
Adds header column with specified title, specified code and default column width 150.
addIdentifier(String, String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1.MaterialIdentifierCollection
 
addIdentifier(String, String) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.MaterialIdentifierCollection
 
addInputWidgets(IManagedInputWidgetDescription...) - Method in interface ch.systemsx.cisd.openbis.generic.shared.basic.dto.api.IManagedUiAction
Adds specified input widget descriptions that will be used in user interface for modifcation of a managed property.
addItemListener(ItemListener) - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.VocabularyTermsComboBoxPanel
 
addMatchClause(SearchCriteria.MatchClause) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
Add a new match clause.
addMaterial(IMaterialId) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
 
addMetaproject(Metaproject) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
addMetaproject(Metaproject) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment.ExperimentInitializer
 
addMetaproject(Metaproject) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Material.MaterialInitializer
 
addMetaproject(Metaproject) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample.SampleInitializer
 
addNewDataSet() - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.model.DataSetUploadTableModel
 
addNewDataSetInfo(DataSetUploadClientModel.NewDataSetInfo) - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.model.DataSetUploadClientModel
Add a new data set info to the list of data set info objects and return it.
addPoolName(boolean) - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadPoolExecutor
If addPoolName is true, the threads will contain the pool name as the first part of the thread names.
addPropertyAssignmentError(Exception, PropertyAssignment) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataTransactionErrors
 
addPropertyType(PropertyType) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup.PropertyTypeGroupInitializer
 
addPropertyTypeGroup(PropertyTypeGroup) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityTypeInitializer
 
AddressSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.search
 
AddressSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.search.AddressSearchCriteria
 
addRow() - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.ISimpleTableModelBuilderAdaptor
Adds an empty row and returns a row builder for setting values of this row.
addRow(Serializable[]) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryTableModel
Adds a row of values.
addSample(ISampleId) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MetaprojectAssignmentsIds
 
addSecondaryDataSetInformation(DataSetInformation) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.impl.ImageDataSetInformation
 
addSubCriteria(SearchSubCriteria) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
Add a new sub search criteria.
addSupportedInterfaceVersion(RpcServiceInterfaceVersionDTO) - Method in class ch.systemsx.cisd.openbis.common.api.server.RpcServiceNameServer
Add an interface version to the registry.
addTableAction(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.basic.dto.api.IManagedUiDescription
Adds a table action with given name to actions that can be performed in the user interface for modification of the managed property.
addTerm(IVocabularyTerm) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.Vocabulary
 
addTerm(IVocabularyTerm) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IVocabulary
adds a vocabulary term to the dictionary.
addTerm(IVocabularyTerm) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Vocabulary
 
addTerm(IVocabularyTerm) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IVocabulary
adds a vocabulary term to the dictionary.
addTerm(IVocabularyTerm) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.Vocabulary
 
addTerm(IVocabularyTerm) - Method in interface ch.systemsx.cisd.openbis.generic.server.jython.api.v1.IVocabulary
adds a vocabulary term to the dictionary.
addThumbnailsStorageFormat(ThumbnailsStorageFormat) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.ImageStorageConfiguraton
Adds new thumbnails setting to the list
addToMetaproject(String, IMetaprojectId, MetaprojectAssignmentsIds) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationChangingService
 
addToMetaproject(String, IMetaprojectId, MetaprojectAssignmentsIds) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Adds given entities to an existing metaproject.
addTypeRegistrationError(Exception, IAbstractType) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataTransactionErrors
 
addUnofficialVocabularyTerm(Vocabulary, String, String, String, Long) - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.model.DataSetUploadClientModel
 
addUnofficialVocabularyTerm(String, TechId, String, String, String, Long) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationChangingService
 
addUnofficialVocabularyTerm(String, Long, NewVocabularyTerm) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationChangingService
 
addUnofficialVocabularyTerm(String, TechId, String, String, String, Long) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Deprecated.
Because the parameters refer to an internal openBIS class (TechID).
addUnofficialVocabularyTerm(String, Long, NewVocabularyTerm) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Adds new unofficial terms to a vocabulary starting from specified ordinal + 1.
addUploadObserver(UploadObserver) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
 
addValue(String, String) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.IFeatureDefinition
 
addValue(int, int, String) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.IFeatureDefinition
 
addValue(String, String) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.impl.FeatureDefinition
 
addValue(int, int, String) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.impl.FeatureDefinition
 
addVersion(RpcServiceInterfaceVersionDTO) - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
 
addVocabularyRegistrationError(Exception, IVocabulary) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataTransactionErrors
 
AddVocabularyTermDialog - Class in ch.systemsx.cisd.openbis.dss.client.api.gui
 
AddVocabularyTermDialog(JFrame, ComboBoxModel, Vocabulary, DataSetUploadClientModel) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.AddVocabularyTermDialog
 
addVocabularyTerms(Long, List<VocabularyTerm>, Long, boolean) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.EncapsulatedCommonServer
 
addVocabularyTermsRegistrationError(Exception, List<VocabularyTerm>) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataTransactionErrors
 
afterClass() - Method in class ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase
 
afterExecute(Runnable, Throwable) - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadPoolExecutor
 
afterPropertiesSet() - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationChangingServiceJsonServer
 
afterPropertiesSet() - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationChangingServiceServer
 
afterPropertiesSet() - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationServiceJsonServer
 
afterPropertiesSet() - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationServiceServer
 
afterPropertiesSet() - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.WebInformationServiceJsonServer
 
afterPropertiesSet() - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.server.api.v1.ProteomicsDataServiceServer
 
afterPropertiesSet() - Method in class ch.systemsx.cisd.openbis.plugin.query.server.api.v1.QueryServiceJsonServer
 
afterPropertiesSet() - Method in class ch.systemsx.cisd.openbis.plugin.query.server.api.v1.QueryServiceServer
 
AggregationService - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service
 
AggregationService() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.AggregationService
 
AggregationServiceDescription - Class in ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto
Bean with information about aggregation services that provide data.
AggregationServiceDescription() - Constructor for class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.AggregationServiceDescription
 
AggregationServiceExecutionOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute
 
AggregationServiceExecutionOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute.AggregationServiceExecutionOptions
 
AggregationServiceFetchOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.fetchoptions
 
AggregationServiceFetchOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.fetchoptions.AggregationServiceFetchOptions
 
AggregationServiceSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.search
 
AggregationServiceSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.search.AggregationServiceSearchCriteria
 
AggregationServiceSortOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.fetchoptions
 
AggregationServiceSortOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.fetchoptions.AggregationServiceSortOptions
 
AggregationServiceType - Enum in ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto
The different kinds of aggregation services.
AlignmentMatch - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Alignment match between a sequence and a query.
AlignmentMatch() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AlignmentMatch
 
AnalysisProcedureTest - Class in ch.systemsx.cisd.openbis.plugin.screening.client.api.v1
A test class for the methods that take an analysis procedure.
AndDataSetFilter - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
Combining filters by logical AND.
AndDataSetFilter(IDataSetFilter...) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.filter.AndDataSetFilter
 
AnyFieldMatchClause(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.AnyFieldMatchClause
Factory method to create a MatchClause matching against any property or attribute.
AnyFieldSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
AnyFieldSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.AnyFieldSearchCriteria
 
AnyPropertyMatchClause(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.AnyPropertyMatchClause
Factory method to create a MatchClause matching against any property.
AnyPropertySearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
AnyPropertySearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.AnyPropertySearchCriteria
 
AnyStringValue - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
AnyStringValue() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.AnyStringValue
 
append(String, Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.ObjectToString
 
append(ImageTransformation) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ImageTransformationBuffer
Appends a single transformation and returns it.
appendAll(ImageTransformation...) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ImageTransformationBuffer
Appends any specified transformations.
appendAllBitShiftsFor12BitGrayscale() - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ImageTransformationBuffer
Appends transformations which extracts a range of grayscale image colors by choosing 8 consecutive bits.
appendAllBitShiftsFor16BitGrayscale() - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ImageTransformationBuffer
Appends transformations which extracts a range of grayscale image colors by choosing 8 consecutive bits.
appendAutoRescaleGrayscaleIntensity(float) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ImageTransformationBuffer
Appends transformation which converts each single grayscale image to 8 bit color depth and rescales pixels intensities so that the darkest pixel will become black and the brightest will become white.
appendAutoRescaleGrayscaleIntensity(float, String) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ImageTransformationBuffer
appendFieldsToStringBuilder(ToStringBuilder) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType
 
appendFieldsToStringBuilder(ToStringBuilder) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
For subclasses to override
appendFileInfos(ArrayList<FileInfoDssDTO>, boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.HierarchicalFileInfoDssBuilder
Append file info starting from the listing root node.
appendFileInfosForFile(File, ArrayList<FileInfoDssDTO>, boolean) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssBuilder
Append file info for the requested file or file hierarchy.
appendGrayscaleBitShifting(int) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ImageTransformationBuffer
Appends transformation which extracts a range of grayscale image colors by choosing 8 consecutive bits starting from the specified one.
appendImageMagicConvert(String) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ImageTransformationBuffer
Allows to transform the images with ImageMagic convert tool (which has to be installed and accessible).
appendImageMagicConvert(String, String) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ImageTransformationBuffer
appendNameAndObject(StringBuilder, String, Object) - Static method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.ImageStorageConfiguraton
 
appendRescaleGrayscaleIntensity(int, int) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ImageTransformationBuffer
Appends transformation which converts grayscale image pixel intensities from the range [blackPointIntensity, whitePointIntensity] to 8 bit color depth.
appendRescaleGrayscaleIntensity(int, int, String) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ImageTransformationBuffer
appendToString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.AbstractEntitySearchResultLocation
 
appendToString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFileBlastSearchResultLocation
 
appendToString() - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityPropertyBlastSearchResultLocation
 
archiveDataSets(String, List<? extends IDataSetId>, DataSetArchiveOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Archives data sets with the provided IDataSetId ids.
ArchiveDataSetsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.archive
 
ArchiveDataSetsOperation(List<? extends IDataSetId>, DataSetArchiveOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.archive.ArchiveDataSetsOperation
 
ArchiveDataSetsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.archive
 
ArchiveDataSetsOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.archive.ArchiveDataSetsOperationResult
 
ArchivingRequestedSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search
 
ArchivingRequestedSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.ArchivingRequestedSearchCriteria
 
ArchivingStatus - Enum in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset
 
areMatching(Object, Object) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.IFetchOptionsMatcher
 
areMatching(Object, Object, IFetchOptionsMatcher) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.IFetchPropertyHandler
 
areThumbnailsGenerated() - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.impl.ImageDataSetStructure
 
arguments - Variable in class ch.systemsx.cisd.openbis.dss.client.api.cli.AbstractCommand
 
Arguments() - Constructor for class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataRegistrationScriptRunnerStandalone.Arguments
 
asc() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.SortOrder
 
asNewDataSetDTO() - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTOBuilder
Convert the builder into a NewDataSetDTO object.
assignPropertyType(IEntityType, IPropertyTypeImmutable) - Method in interface ch.systemsx.cisd.openbis.generic.server.jython.api.v1.IMasterDataRegistrationTransaction
Assigns a property type to an entity type.
assignPropertyType(IEntityType, IPropertyTypeImmutable) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataRegistrationTransaction
 
assignRoleToSpace(RoleWithHierarchy.RoleCode, ISpaceImmutable, List<String>, List<String>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
assignRoleToSpace(RoleWithHierarchy.RoleCode, ISpaceImmutable, List<String>, List<String>) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Give users and/or groups access privileges to a space.
assignRoleToSpace(RoleWithHierarchy.RoleCode, ISpaceImmutable, List<String>, List<String>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
AsynchronousOperationExecutionOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.operation
 
AsynchronousOperationExecutionOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.AsynchronousOperationExecutionOptions
 
AsynchronousOperationExecutionResults - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.operation
 
AsynchronousOperationExecutionResults(OperationExecutionPermId) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.AsynchronousOperationExecutionResults
 
AsyncNodeAction<T> - Class in ch.systemsx.cisd.openbis.dss.client.api.gui
 
AsyncNodeAction(JTree, DefaultMutableTreeNode, Timer) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.AsyncNodeAction
 
Attachment - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment
 
Attachment() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.Attachment
 
Attachment - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing an attachment.
Attachment(Attachment.AttachmentInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
 
Attachment.AttachmentInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
AttachmentCreation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.create
 
AttachmentCreation() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.create.AttachmentCreation
 
AttachmentFetchOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.fetchoptions
 
AttachmentFetchOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.fetchoptions.AttachmentFetchOptions
 
AttachmentFileName - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.id
Attachment file name.
AttachmentFileName(String) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.id.AttachmentFileName
 
AttachmentImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
 
AttachmentImmutable(Attachment) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AttachmentImmutable
 
AttachmentInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment.AttachmentInitializer
 
AttachmentListUpdateValue - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.update
 
AttachmentListUpdateValue() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.update.AttachmentListUpdateValue
 
AttachmentSortOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.fetchoptions
 
AttachmentSortOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.fetchoptions.AttachmentSortOptions
 
AttributeMatchClause(SearchCriteria.MatchClauseAttribute, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.AttributeMatchClause
Factory method to create a MatchClause matching on a specific attribute.
AuthorizationGroup - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup
 
AuthorizationGroup() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.AuthorizationGroup
 
AuthorizationGroupCreation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.create
 
AuthorizationGroupCreation() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.create.AuthorizationGroupCreation
 
AuthorizationGroupDeletionOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.delete
 
AuthorizationGroupDeletionOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.delete.AuthorizationGroupDeletionOptions
 
AuthorizationGroupFetchOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.fetchoptions
 
AuthorizationGroupFetchOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.fetchoptions.AuthorizationGroupFetchOptions
 
AuthorizationGroupImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
 
AuthorizationGroupImmutable(AuthorizationGroup) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationGroupImmutable
 
AuthorizationGroupPermId - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.id
 
AuthorizationGroupPermId(String) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.id.AuthorizationGroupPermId
 
AuthorizationGroupSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.search
 
AuthorizationGroupSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.search.AuthorizationGroupSearchCriteria
 
AuthorizationGroupSortOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.fetchoptions
 
AuthorizationGroupSortOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.fetchoptions.AuthorizationGroupSortOptions
 
AuthorizationGroupUpdate - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.update
 
AuthorizationGroupUpdate() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.update.AuthorizationGroupUpdate
 
AuthorizationGuard - Annotation Type in ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization
Parameter annotation to specify which authorization class should be used to check user access.
AuthorizationHelper - Class in ch.systemsx.cisd.etlserver.registrator.api.v1.impl
 
AuthorizationHelper() - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.AuthorizationHelper
 
AuthorizationHelper - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
 
AuthorizationHelper() - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationHelper
 
AuthorizationHelper.EntityKind - Enum in ch.systemsx.cisd.etlserver.registrator.api.v1.impl
 
AuthorizationHelper.EntityKind - Enum in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
 
AuthorizationService - Class in ch.systemsx.cisd.etlserver.registrator.api.v1.impl
 
AuthorizationService(IEncapsulatedOpenBISService) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.AuthorizationService
 
AuthorizationService - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
 
AuthorizationService(IEncapsulatedOpenBISService) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationService
 
AutoRescaleIntensityImageTransformerFactory - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations
Transformation performed by IntensityRescaling.rescaleIntensityLevelTo8Bits(Pixels, Levels, Channel...) where levels are computed automatically by IntensityRescaling.computeLevels(Pixels, float, Channel...).
AutoRescaleIntensityImageTransformerFactory(float) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.AutoRescaleIntensityImageTransformerFactory
 
AutoRescaleIntensityImageTransformerFactory - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations
This class is obsolete, and should not be used.
AutoRescaleIntensityImageTransformerFactory(float) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations.AutoRescaleIntensityImageTransformerFactory
 
available() - Method in class ch.systemsx.cisd.base.io.AdapterIInputStreamToInputStream
 
available() - Method in class ch.systemsx.cisd.base.io.AdapterInputStreamToIInputStream
 
available() - Method in class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
 
available() - Method in interface ch.systemsx.cisd.base.io.IInputStream
 
available() - Method in class ch.systemsx.cisd.base.io.RandomAccessFileImpl
 

B

BasicDataSetInformation - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api
Basic attributes of a dataset connected to a sample and optionally to one parent dataset.
BasicDataSetInformation() - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.BasicDataSetInformation
 
BasicDataSetInformation - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.v1
Deprecated. 
BasicDataSetInformation() - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.BasicDataSetInformation
Deprecated.
 
BdsDirectoryStorageFormatPermId - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.id
Bds directory storage format perm id.
BdsDirectoryStorageFormatPermId() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.id.BdsDirectoryStorageFormatPermId
 
beforeExecute(Thread, Runnable) - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadPoolExecutor
 
BevelArrowIcon - Class in ch.systemsx.cisd.openbis.dss.client.api.gui.table
 
BevelArrowIcon(int, boolean, boolean) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.table.BevelArrowIcon
Standard constructor - builds an icon with the specified attributes.
BevelArrowIcon(Color, Color, Color, int, int) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.table.BevelArrowIcon
Standard constructor - builds an icon with the specified attributes.
bindTemplateParameters(HttpServletRequest, Template) - Method in class ch.systemsx.cisd.openbis.generic.client.api.gui.AbstractWebStartClientServingServlet
 
bindTemplateParameters(HttpServletRequest, Template) - Method in class ch.systemsx.cisd.openbis.generic.client.api.gui.DataSetUploadClientServingServlet
 
BlastDatabase - Class in ch.systemsx.cisd.openbis.dss.generic.server.api.v2.sequencedatabases
Implementation of ISearchDomainService based on BLAST.
BlastDatabase(Properties, File) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.server.api.v2.sequencedatabases.BlastDatabase
 
BlastScore - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Wraps raw score, bit score and evalue of a BLAST search result.
BlastScore() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.BlastScore
 
BLUE - Static variable in class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.ChannelColor
Deprecated.
 
BLUE - Static variable in class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.ChannelColorComponent
Deprecated.
 
BooleanFieldSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
BooleanFieldSearchCriteria(String, SearchFieldType) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.BooleanFieldSearchCriteria
 
BuildAndEnvironmentInfo - Class in ch.systemsx.cisd.base
The build and environment information for cisd-base.
buildArraySerializer(SerializerProvider, ArrayType, BeanDescription, boolean, TypeSerializer, JsonSerializer<Object>) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.serializer.JsonSerializerFactory
 
buildCollectionSerializer(SerializerProvider, CollectionType, BeanDescription, boolean, TypeSerializer, JsonSerializer<Object>) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.serializer.JsonSerializerFactory
 
buildMapSerializer(SerializerProvider, MapType, BeanDescription, boolean, JsonSerializer<Object>, TypeSerializer, JsonSerializer<Object>) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.serializer.JsonSerializerFactory
 
buildTypeDeserializer(DeserializationConfig, JavaType, Collection<NamedType>) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.resolver.JsonTypeAndClassResolverBuilder
 
buildTypeSerializer(SerializationConfig, JavaType, Collection<NamedType>) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.resolver.JsonTypeAndClassResolverBuilder
 
BUTTON_HEIGHT - Static variable in class ch.systemsx.cisd.openbis.dss.client.api.gui.DataSetUploadClient
 
BUTTON_WIDTH - Static variable in class ch.systemsx.cisd.openbis.dss.client.api.gui.DataSetUploadClient
 
ByteBufferRandomAccessFile - Class in ch.systemsx.cisd.base.io
An implementation of IRandomAccessFile based on a ByteBuffer.
ByteBufferRandomAccessFile(ByteBuffer, int) - Constructor for class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
Creates a IRandomAccessFile wrapper for the given buf.
ByteBufferRandomAccessFile(ByteBuffer) - Constructor for class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
Creates a IRandomAccessFile wrapper for the given buf.
ByteBufferRandomAccessFile(byte[], int) - Constructor for class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
Creates a IRandomAccessFile wrapper for the given array.
ByteBufferRandomAccessFile(byte[]) - Constructor for class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
Creates a IRandomAccessFile wrapper for the given array.
ByteBufferRandomAccessFile(int) - Constructor for class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
Creates a IRandomAccessFile wrapper for a ByteBuffer with capacity.
byteToChar(byte[], NativeData.ByteOrder, int, int) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a byte[] array into a char[] array.
byteToChar(byte[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a byte[] array into a char[] array.
byteToDouble(byte[], NativeData.ByteOrder, int, int) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a byte[] array into a double[] array.
byteToDouble(byte[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a byte[] array into a double[] array.
byteToFloat(byte[], NativeData.ByteOrder, int, int) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a byte[] array into a float[] array.
byteToFloat(byte[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a byte[] array into a float[] array.
byteToInt(byte[], NativeData.ByteOrder, int, int) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a byte[] array into an int[] array.
byteToInt(byte[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a byte[] array into an int[] array.
byteToLong(byte[], NativeData.ByteOrder, int, int) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a byte[] array into a long[] array.
byteToLong(byte[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a byte[] array into a long[] array.
byteToShort(byte[], NativeData.ByteOrder, int, int) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a byte[] array into a short[] array.
byteToShort(byte[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a byte[] array into a short[] array.

C

CacheMode - Enum in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions
 
cacheMode(CacheMode) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.FetchOptions
 
call() - Method in class ch.systemsx.cisd.common.api.retry.RetryCaller
 
callWithRetry() - Method in class ch.systemsx.cisd.common.api.retry.RetryCaller
 
canBeQueued() - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.model.DataSetUploadClientModel.NewDataSetInfo
 
cancel() - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.AbstractSwingGUI
 
cancel() - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.DataSetUploadClient
 
canDetectProcesses() - Static method in class ch.systemsx.cisd.base.unix.Unix
Returns true, if process detection is available on this system.
canGetContainedSamples() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.SampleImmutable
 
canGetContainedSamples() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
 
canGetContainedSamples() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1.ISampleImmutable
Return true if this sample object has contained samples available.
canGetContainedSamples() - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISampleImmutable
Return true if this sample object has contained samples available.
capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
Returns the capacity of elements in the array.
capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDArray
 
capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
 
capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
 
capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
 
capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
 
capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
 
capacity() - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
 
capacityHyperRows - Variable in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
 
ch.ethz.sis.openbis.generic.asapi.v3 - package ch.ethz.sis.openbis.generic.asapi.v3
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment - package ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup - package ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.common - package ch.ethz.sis.openbis.generic.asapi.v3.dto.common
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.common.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.common.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.common.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.common.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view - package ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.common.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.common.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.common.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.common.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.common.interfaces - package ch.ethz.sis.openbis.generic.asapi.v3.dto.common.interfaces
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.common.operation - package ch.ethz.sis.openbis.generic.asapi.v3.dto.common.operation
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.common.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.common.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset - package ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.archive - package ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.archive
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.history - package ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.history
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.lock - package ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.lock
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.unarchive - package ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.unarchive
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.unlock - package ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.unlock
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore - package ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion - package ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.confirm - package ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.confirm
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.revert - package ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.revert
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.entity.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.entity.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype - package ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment - package ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.history - package ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.history
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms - package ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.global - package ch.ethz.sis.openbis.generic.asapi.v3.dto.global
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.global.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.global.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.global.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.global.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.history - package ch.ethz.sis.openbis.generic.asapi.v3.dto.history
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.history.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.history.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.material - package ch.ethz.sis.openbis.generic.asapi.v3.dto.material
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.material.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.material.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.material.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.material.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.material.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.material.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.material.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.material.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.material.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.material.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.material.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.material.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.material.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.material.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.objectkindmodification - package ch.ethz.sis.openbis.generic.asapi.v3.dto.objectkindmodification
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.objectkindmodification.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.objectkindmodification.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.objectkindmodification.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.objectkindmodification.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.operation - package ch.ethz.sis.openbis.generic.asapi.v3.dto.operation
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.person - package ch.ethz.sis.openbis.generic.asapi.v3.dto.person
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.person.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.person.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.person.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.person.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.person.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.person.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.person.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.person.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.person.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.person.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.person.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.person.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin - package ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.project - package ch.ethz.sis.openbis.generic.asapi.v3.dto.project
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.project.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.project.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.project.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.project.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.project.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.project.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.project.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.project.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.project.history - package ch.ethz.sis.openbis.generic.asapi.v3.dto.project.history
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.project.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.project.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.project.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.project.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.project.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.project.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.property - package ch.ethz.sis.openbis.generic.asapi.v3.dto.property
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.property.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.property.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.property.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.property.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.property.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.property.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.property.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.property.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.property.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.property.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.property.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.property.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.property.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.property.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.query - package ch.ethz.sis.openbis.generic.asapi.v3.dto.query
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.query.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.query.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.query.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.query.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.query.execute - package ch.ethz.sis.openbis.generic.asapi.v3.dto.query.execute
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.query.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.query.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.query.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.query.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.query.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.query.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.query.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.query.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.query.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.query.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.rights - package ch.ethz.sis.openbis.generic.asapi.v3.dto.rights
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.rights.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.rights.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.rights.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.rights.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment - package ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.sample - package ch.ethz.sis.openbis.generic.asapi.v3.dto.sample
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.history - package ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.history
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation - package ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.service - package ch.ethz.sis.openbis.generic.asapi.v3.dto.service
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute - package ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.service.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.service.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.service.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.service.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.service.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.service.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.session - package ch.ethz.sis.openbis.generic.asapi.v3.dto.session
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.session.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.session.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.space - package ch.ethz.sis.openbis.generic.asapi.v3.dto.space
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.space.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.space.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.space.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.space.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.space.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.space.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.space.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.space.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.space.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.space.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.space.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.space.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.space.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.space.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.tag - package ch.ethz.sis.openbis.generic.asapi.v3.dto.tag
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary - package ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.delete - package ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.delete
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.get - package ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.get
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.id - package ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.id
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.search - package ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.search
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.update
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.webapp - package ch.ethz.sis.openbis.generic.asapi.v3.dto.webapp
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.webapp.create - package ch.ethz.sis.openbis.generic.asapi.v3.dto.webapp.create
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.webapp.fetchoptions - package ch.ethz.sis.openbis.generic.asapi.v3.dto.webapp.fetchoptions
 
ch.ethz.sis.openbis.generic.asapi.v3.dto.webapp.update - package ch.ethz.sis.openbis.generic.asapi.v3.dto.webapp.update
 
ch.ethz.sis.openbis.generic.asapi.v3.exceptions - package ch.ethz.sis.openbis.generic.asapi.v3.exceptions
 
ch.ethz.sis.openbis.generic.asapi.v3.plugin.service - package ch.ethz.sis.openbis.generic.asapi.v3.plugin.service
 
ch.ethz.sis.openbis.generic.asapi.v3.plugin.service.context - package ch.ethz.sis.openbis.generic.asapi.v3.plugin.service.context
 
ch.ethz.sis.openbis.generic.dssapi.v3 - package ch.ethz.sis.openbis.generic.dssapi.v3
 
ch.ethz.sis.openbis.generic.dssapi.v3.dto.dataset.create - package ch.ethz.sis.openbis.generic.dssapi.v3.dto.dataset.create
 
ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile - package ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile
 
ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.create - package ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.create
 
ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.download - package ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.download
 
ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.fastdownload - package ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.fastdownload
 
ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.fetchoptions - package ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.fetchoptions
 
ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.id - package ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.id
 
ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.search - package ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.search
 
ch.ethz.sis.openbis.generic.dssapi.v3.fastdownload - package ch.ethz.sis.openbis.generic.dssapi.v3.fastdownload
 
ch.systemsx.cisd.base - package ch.systemsx.cisd.base
 
ch.systemsx.cisd.base.annotation - package ch.systemsx.cisd.base.annotation
 
ch.systemsx.cisd.base.convert - package ch.systemsx.cisd.base.convert
 
ch.systemsx.cisd.base.exceptions - package ch.systemsx.cisd.base.exceptions
 
ch.systemsx.cisd.base.image - package ch.systemsx.cisd.base.image
 
ch.systemsx.cisd.base.io - package ch.systemsx.cisd.base.io
 
ch.systemsx.cisd.base.mdarray - package ch.systemsx.cisd.base.mdarray
 
ch.systemsx.cisd.base.namedthread - package ch.systemsx.cisd.base.namedthread
 
ch.systemsx.cisd.base.tests - package ch.systemsx.cisd.base.tests
 
ch.systemsx.cisd.base.unix - package ch.systemsx.cisd.base.unix
 
ch.systemsx.cisd.base.utilities - package ch.systemsx.cisd.base.utilities
 
ch.systemsx.cisd.common.annotation - package ch.systemsx.cisd.common.annotation
 
ch.systemsx.cisd.common.api - package ch.systemsx.cisd.common.api
 
ch.systemsx.cisd.common.api.retry - package ch.systemsx.cisd.common.api.retry
 
ch.systemsx.cisd.common.api.retry.config - package ch.systemsx.cisd.common.api.retry.config
 
ch.systemsx.cisd.common.mail - package ch.systemsx.cisd.common.mail
 
ch.systemsx.cisd.etlserver - package ch.systemsx.cisd.etlserver
 
ch.systemsx.cisd.etlserver.api.v1 - package ch.systemsx.cisd.etlserver.api.v1
 
ch.systemsx.cisd.etlserver.registrator - package ch.systemsx.cisd.etlserver.registrator
 
ch.systemsx.cisd.etlserver.registrator.api.impl - package ch.systemsx.cisd.etlserver.registrator.api.impl
 
ch.systemsx.cisd.etlserver.registrator.api.v1 - package ch.systemsx.cisd.etlserver.registrator.api.v1
 
ch.systemsx.cisd.etlserver.registrator.api.v1.impl - package ch.systemsx.cisd.etlserver.registrator.api.v1.impl
 
ch.systemsx.cisd.etlserver.registrator.api.v2 - package ch.systemsx.cisd.etlserver.registrator.api.v2
 
ch.systemsx.cisd.etlserver.registrator.api.v2.impl - package ch.systemsx.cisd.etlserver.registrator.api.v2.impl
 
ch.systemsx.cisd.openbis.common.api.client - package ch.systemsx.cisd.openbis.common.api.client
 
ch.systemsx.cisd.openbis.common.api.server - package ch.systemsx.cisd.openbis.common.api.server
 
ch.systemsx.cisd.openbis.common.api.server.json.common - package ch.systemsx.cisd.openbis.common.api.server.json.common
 
ch.systemsx.cisd.openbis.common.api.server.json.deserializer - package ch.systemsx.cisd.openbis.common.api.server.json.deserializer
 
ch.systemsx.cisd.openbis.common.api.server.json.introspector - package ch.systemsx.cisd.openbis.common.api.server.json.introspector
 
ch.systemsx.cisd.openbis.common.api.server.json.mapping - package ch.systemsx.cisd.openbis.common.api.server.json.mapping
 
ch.systemsx.cisd.openbis.common.api.server.json.resolver - package ch.systemsx.cisd.openbis.common.api.server.json.resolver
 
ch.systemsx.cisd.openbis.common.api.server.json.serializer - package ch.systemsx.cisd.openbis.common.api.server.json.serializer
 
ch.systemsx.cisd.openbis.common.api.server.json.util - package ch.systemsx.cisd.openbis.common.api.server.json.util
 
ch.systemsx.cisd.openbis.common.io.hierarchical_content.api - package ch.systemsx.cisd.openbis.common.io.hierarchical_content.api
 
ch.systemsx.cisd.openbis.dss.client.api.cli - package ch.systemsx.cisd.openbis.dss.client.api.cli
 
ch.systemsx.cisd.openbis.dss.client.api.gui - package ch.systemsx.cisd.openbis.dss.client.api.gui
 
ch.systemsx.cisd.openbis.dss.client.api.gui.model - package ch.systemsx.cisd.openbis.dss.client.api.gui.model
 
ch.systemsx.cisd.openbis.dss.client.api.gui.table - package ch.systemsx.cisd.openbis.dss.client.api.gui.table
 
ch.systemsx.cisd.openbis.dss.client.api.gui.tree - package ch.systemsx.cisd.openbis.dss.client.api.gui.tree
 
ch.systemsx.cisd.openbis.dss.client.api.v1 - package ch.systemsx.cisd.openbis.dss.client.api.v1
 
ch.systemsx.cisd.openbis.dss.client.api.v1.impl - package ch.systemsx.cisd.openbis.dss.client.api.v1.impl
 
ch.systemsx.cisd.openbis.dss.client.api.v3 - package ch.systemsx.cisd.openbis.dss.client.api.v3
 
ch.systemsx.cisd.openbis.dss.etl.dto.api - package ch.systemsx.cisd.openbis.dss.etl.dto.api
 
ch.systemsx.cisd.openbis.dss.etl.dto.api.impl - package ch.systemsx.cisd.openbis.dss.etl.dto.api.impl
 
ch.systemsx.cisd.openbis.dss.etl.dto.api.thumbnails - package ch.systemsx.cisd.openbis.dss.etl.dto.api.thumbnails
 
ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations - package ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations
 
ch.systemsx.cisd.openbis.dss.etl.dto.api.utils - package ch.systemsx.cisd.openbis.dss.etl.dto.api.utils
 
ch.systemsx.cisd.openbis.dss.etl.dto.api.v1 - package ch.systemsx.cisd.openbis.dss.etl.dto.api.v1
 
ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.impl - package ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.impl
 
ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.thumbnails - package ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.thumbnails
 
ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations - package ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations
 
ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.utils - package ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.utils
 
ch.systemsx.cisd.openbis.dss.etl.dto.api.v2 - package ch.systemsx.cisd.openbis.dss.etl.dto.api.v2
 
ch.systemsx.cisd.openbis.dss.etl.dto.api.v2.impl - package ch.systemsx.cisd.openbis.dss.etl.dto.api.v2.impl
 
ch.systemsx.cisd.openbis.dss.generic.server.api.v1 - package ch.systemsx.cisd.openbis.dss.generic.server.api.v1
 
ch.systemsx.cisd.openbis.dss.generic.server.api.v2.sequencedatabases - package ch.systemsx.cisd.openbis.dss.generic.server.api.v2.sequencedatabases
 
ch.systemsx.cisd.openbis.dss.generic.server.fs.api - package ch.systemsx.cisd.openbis.dss.generic.server.fs.api
 
ch.systemsx.cisd.openbis.dss.generic.server.fs.api.file - package ch.systemsx.cisd.openbis.dss.generic.server.fs.api.file
 
ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api - package ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api
 
ch.systemsx.cisd.openbis.dss.generic.shared.api.internal - package ch.systemsx.cisd.openbis.dss.generic.shared.api.internal
 
ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization - package ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization
 
ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1 - package ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1
 
ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1.authorization - package ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1.authorization
 
ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2 - package ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2
 
ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.authorization - package ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.authorization
 
ch.systemsx.cisd.openbis.dss.generic.shared.api.v1 - package ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
 
ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation - package ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation
 
ch.systemsx.cisd.openbis.dss.screening.shared.api.internal - package ch.systemsx.cisd.openbis.dss.screening.shared.api.internal
 
ch.systemsx.cisd.openbis.dss.screening.shared.api.internal.authorization - package ch.systemsx.cisd.openbis.dss.screening.shared.api.internal.authorization
 
ch.systemsx.cisd.openbis.dss.screening.shared.api.v1 - package ch.systemsx.cisd.openbis.dss.screening.shared.api.v1
 
ch.systemsx.cisd.openbis.generic.client.api.gui - package ch.systemsx.cisd.openbis.generic.client.api.gui
 
ch.systemsx.cisd.openbis.generic.server.api.v1 - package ch.systemsx.cisd.openbis.generic.server.api.v1
 
ch.systemsx.cisd.openbis.generic.server.api.v1.sort - package ch.systemsx.cisd.openbis.generic.server.api.v1.sort
 
ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api - package ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api
 
ch.systemsx.cisd.openbis.generic.server.dataaccess.entity_validation.api - package ch.systemsx.cisd.openbis.generic.server.dataaccess.entity_validation.api
 
ch.systemsx.cisd.openbis.generic.server.jython.api.v1 - package ch.systemsx.cisd.openbis.generic.server.jython.api.v1
 
ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl - package ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl
 
ch.systemsx.cisd.openbis.generic.shared.api.v1 - package ch.systemsx.cisd.openbis.generic.shared.api.v1
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.experiment
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.material
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.metaproject
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.project
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample - package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.sample
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.filter - package ch.systemsx.cisd.openbis.generic.shared.api.v1.filter
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.json - package ch.systemsx.cisd.openbis.generic.shared.api.v1.json
 
ch.systemsx.cisd.openbis.generic.shared.api.v1.util - package ch.systemsx.cisd.openbis.generic.shared.api.v1.util
 
ch.systemsx.cisd.openbis.generic.shared.basic.dto.api - package ch.systemsx.cisd.openbis.generic.shared.basic.dto.api
 
ch.systemsx.cisd.openbis.generic.shared.hotdeploy_plugins.api - package ch.systemsx.cisd.openbis.generic.shared.hotdeploy_plugins.api
 
ch.systemsx.cisd.openbis.generic.shared.managed_property.api - package ch.systemsx.cisd.openbis.generic.shared.managed_property.api
 
ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1 - package ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1
 
ch.systemsx.cisd.openbis.plugin.proteomics.server.api.v1 - package ch.systemsx.cisd.openbis.plugin.proteomics.server.api.v1
 
ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1 - package ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1
 
ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto - package ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto
 
ch.systemsx.cisd.openbis.plugin.query.client.api.v1 - package ch.systemsx.cisd.openbis.plugin.query.client.api.v1
API Facade
ch.systemsx.cisd.openbis.plugin.query.server.api.v1 - package ch.systemsx.cisd.openbis.plugin.query.server.api.v1
 
ch.systemsx.cisd.openbis.plugin.query.shared.api.v1 - package ch.systemsx.cisd.openbis.plugin.query.shared.api.v1
 
ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto - package ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto
Data Transfer Objects
ch.systemsx.cisd.openbis.plugin.screening.client.api.v1 - package ch.systemsx.cisd.openbis.plugin.screening.client.api.v1
 
ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1 - package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1
 
ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto - package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto
 
ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.json - package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.json
 
changeByteOrder(short) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Changes the byte order of the bytes constituting s.
changeByteOrder(char) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Changes the byte order of the bytes constituting c.
changeByteOrder(int) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Changes the byte order of the bytes constituting i.
changeByteOrder(float) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Changes the byte order of the bytes constituting f.
changeByteOrder(long) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Changes the byte order of the bytes constituting l.
changeByteOrder(double) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Changes the byte order of the bytes constituting d.
changeSeries(Double, Double) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.IFeatureDefinition
Relevant only in cases where feature values for different timepoints and/or depth-scans are available.
changeSeries(Double, Double) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.impl.FeatureDefinition
 
Channel - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api
A channel in which the image has been acquired.
Channel(String, String) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.Channel
Constructs a channel with a specified code and label.
Channel(String, String, ChannelColor) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.Channel
Constructs a channel with a specified code and label.
Channel(String, String, ChannelColorRGB) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.Channel
Constructs a channel with a specified code and label.
Channel - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.v1
Deprecated. 
Channel(String, String, ChannelColor) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.Channel
Deprecated.
 
Channel(String, String, ChannelColorRGB) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.Channel
Deprecated.
 
Channel(String, String) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.Channel
Deprecated.
 
ChannelColor - Enum in ch.systemsx.cisd.openbis.dss.etl.dto.api
Allowed colors in which channels can be presented.
ChannelColor - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.v1
Deprecated. 
ChannelColor() - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.ChannelColor
Deprecated.
 
ChannelColorComponent - Enum in ch.systemsx.cisd.openbis.dss.etl.dto.api
Color component of an image which constitutes one channel.
ChannelColorComponent - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.v1
Deprecated. 
ChannelColorRGB - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api
RGB color components specify the color in which channel should be displayed.
ChannelColorRGB(int, int, int) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.ChannelColorRGB
 
ChannelColorRGB - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.v1
Deprecated. 
ChannelColorRGB(int, int, int) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.ChannelColorRGB
Deprecated.
 
CHAR_SIZE - Static variable in class ch.systemsx.cisd.base.convert.NativeData
Size of a char value in bytes.
charToByte(char[], NativeData.ByteOrder, int, int) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a char[] array to a byte[] array.
charToByte(char[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a char[] array to a byte[] array.
check() - Static method in exception ch.systemsx.cisd.base.exceptions.InterruptedExceptionUnchecked
Checks whether the current thread has been interrupted and, if it has, throw a InterruptedExceptionUnchecked.
check() - Method in class ch.systemsx.cisd.etlserver.api.v1.PutDataSetServerPluginHolder
 
checkAccess(String, IEncapsulatedOpenBISService, NewDataSetDTO, boolean) - Static method in class ch.systemsx.cisd.etlserver.api.v1.PutDataSetUtil
 
checkDatasetAccess(String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.IDssSessionAuthorizer
Checks whether the session identified by sessionToken is authorized to access the given datasetCode.
checkDatasetAccess(String, List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.IDssSessionAuthorizer
Checks whether the session identified by sessionToken is authorized to access the given datasetCodes.
CheckedExceptionTunnel - Exception in ch.systemsx.cisd.base.exceptions
An exception for tunneling checked exception through code that doesn't expect it.
CheckedExceptionTunnel(Exception) - Constructor for exception ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel
Returns an unchecked exception from a checkedException.
CheckedExceptionTunnel(String) - Constructor for exception ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel
 
CheckedExceptionTunnel() - Constructor for exception ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel
 
checkExists() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ExperimentImmutable
Throw an exception if the sample does not exist
checkExists() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.MaterialImmutable
Throw an exception if the sample does not exist
checkExists() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ProjectImmutable
Throw an exception if the project does not exist
checkExists() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.SampleImmutable
Throw an exception if the sample does not exist
checkExists() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.SpaceImmutable
Throw an exception if the project does not exist
checkExists() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
Throw an exception if the sample does not exist
checkExists() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MaterialImmutable
Throw an exception if the sample does not exist
checkExists() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ProjectImmutable
Throw an exception if the project does not exist
checkExists() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
Throw an exception if the sample does not exist
checkExists() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SpaceImmutable
Throw an exception if the project does not exist
checkExperimentWriteable(String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.IDssSessionAuthorizer
Checks whether the session identified by sessionToken is authorized to write to the given experimentIdentifier.
checkInstanceAdminAuthorization(String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.IDssSessionAuthorizer
Checks whether the session identified by sessionToken has openBIS instance admin privileges.
checkProjectPowerUserAuthorization(String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.IDssSessionAuthorizer
Checks whether the session identified by sessionToken has openBIS project power user privileges.
checkSampleWriteable(String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.IDssSessionAuthorizer
Checks whether the session identified by sessionToken is authorized to write to the given sampleIdentifier.
checkSession() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
Checks whether the session is alive.
checkSession() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
 
checkSession() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.OpenbisServiceFacade
 
checkSession() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.ISimpleOpenbisServiceFacade
Checks whether the session is alive.
checkSpaceWriteable(String, SpaceIdentifier) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.IDssSessionAuthorizer
Checks whether the session identified by sessionToken is authorized to write to the given spaceId.
children() - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.tree.FilterableMutableTreeNode
 
children() - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.IDataAdaptor
Returns child data sets of this data set.
children() - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.ISampleAdaptor
Returns child samples of this sample.
childrenOfType(String) - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.IDataAdaptor
Returns child data sets of this data set.
childrenOfType(String) - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.ISampleAdaptor
Returns child samples of this sample.
choice - Variable in enum ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations.ConvertToolImageTransformerFactory.ToolChoice
 
ClassReferences - Class in ch.systemsx.cisd.openbis.common.api.server.json.util
A utility class that searches for classes and interfaces that are potentially converted in JSON form.
ClassReferences() - Constructor for class ch.systemsx.cisd.openbis.common.api.server.json.util.ClassReferences
 
cleanAfterRegistrationIfNecessary() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.JythonDataSetRegistrationService
 
cleanNewDataSetDTO(NewDataSetDTO) - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.model.DataSetUploadClientModel
Clean the newDataSetDTO object.
cleanUpDirectoryBeforeTheTest(File) - Method in class ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase
Deletes, recreates and verifies that this is the empty directory
cleanupSession(String) - Method in class ch.systemsx.cisd.etlserver.api.v1.PutDataSetService
 
clear() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view.AbstractCollectionView
 
clear() - Method in class ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationPersistentMap
 
clear() - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.ErrorsPanel
 
clearError(JLabel, JComponent, ErrorsPanel) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.gui.UiUtilities
 
clearRunnableName() - Method in class ch.systemsx.cisd.base.namedthread.PoolNameThread
Clears the name of the runnable, setting the name of the thread to the pool name.
clearWellImageCache() - Method in interface ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.IScreeningOpenbisServiceFacade
clearWellImageCache() - Method in class ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ScreeningOpenbisServiceFacade
 
clientModel - Variable in class ch.systemsx.cisd.openbis.dss.client.api.gui.AbstractEntityPickerDialog
 
clone() - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
 
clone() - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
 
clone() - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
 
clone() - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
 
clone() - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
 
clone() - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
 
close() - Method in class ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.download.DataSetFileDownloadReader
 
close() - Method in class ch.systemsx.cisd.base.io.AdapterIInputStreamToInputStream
 
close() - Method in class ch.systemsx.cisd.base.io.AdapterInputStreamToIInputStream
 
close() - Method in class ch.systemsx.cisd.base.io.AdapterIOutputStreamToOutputStream
 
close() - Method in class ch.systemsx.cisd.base.io.AdapterOutputStreamToIOutputStream
 
close() - Method in class ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile
 
close() - Method in interface ch.systemsx.cisd.base.io.IInputStream
 
close() - Method in interface ch.systemsx.cisd.base.io.IOutputStream
 
close() - Method in class ch.systemsx.cisd.base.io.RandomAccessFileImpl
 
close() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
close() - Method in class ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.HierarchicalContentProxy
 
close() - Method in interface ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent
Cleans resources (e.g.
CODE - Static variable in class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.fetchoptions.AuthorizationGroupSortOptions
 
code() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.fetchoptions.AuthorizationGroupSortOptions
 
CODE - Static variable in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.EntitySortOptions
 
code() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.EntitySortOptions
 
CODE - Static variable in class ch.ethz.sis.openbis.generic.asapi.v3.dto.property.fetchoptions.PropertyAssignmentSortOptions
 
code() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.property.fetchoptions.PropertyAssignmentSortOptions
 
CODE - Static variable in class ch.ethz.sis.openbis.generic.asapi.v3.dto.property.fetchoptions.PropertyTypeSortOptions
 
code() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.property.fetchoptions.PropertyTypeSortOptions
 
CODE - Static variable in class ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.fetchoptions.TagSortOptions
 
code() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.fetchoptions.TagSortOptions
 
CODE - Static variable in class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.fetchoptions.VocabularySortOptions
 
code() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.fetchoptions.VocabularySortOptions
 
CODE - Static variable in class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.fetchoptions.VocabularyTermSortOptions
 
code() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.fetchoptions.VocabularyTermSortOptions
 
code() - Method in interface ch.systemsx.cisd.openbis.generic.shared.hotdeploy_plugins.api.IEntityAdaptor
Returns the code.
CodeSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
CodeSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.CodeSearchCriteria
 
CodesSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
CodesSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.CodesSearchCriteria
 
collectAndResolveSubtypes(AnnotatedClass, MapperConfig<?>, AnnotationIntrospector) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.resolver.JsonReflectionsSubTypeResolver
 
CollectionFieldSearchCriteria<T> - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
CollectionFieldSearchCriteria(String, SearchFieldType) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.CollectionFieldSearchCriteria
 
ColorDepthCriterion - Class in ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto
Criterion based on the color depth.
ColorDepthCriterion(Integer...) - Constructor for class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ColorDepthCriterion
Creates an instance which allows all image representation formats with specified color depths.
commandFactory - Variable in class ch.systemsx.cisd.openbis.dss.client.api.cli.AbstractClient
 
CommandHelp - Class in ch.systemsx.cisd.openbis.dss.client.api.cli
Command that gives help about the program and other commands.
CommandHelp(ICommandFactory, String) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.cli.CommandHelp
 
CommandTestExtractMetadata - Class in ch.systemsx.cisd.openbis.dss.client.api.cli
Command that runs an extract metadata script and returns the extracted properties.
CommandTestExtractMetadata() - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.cli.CommandTestExtractMetadata
 
commit() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
Commit the transaction.
commit() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
Commit the transaction.
commit() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonDataSetRegistrationServiceV2
Commit any scheduled changes.
commit() - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataRegistrationTransaction
 
commitTransaction(DataSetRegistrationService<T>, DataSetRegistrationTransaction<T>) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IJavaDataSetRegistrationDropboxV1
 
compareTo(RollbackStack.StackElement) - Method in class ch.systemsx.cisd.etlserver.registrator.api.impl.RollbackStack.StackElement
 
compareTo(ImageIdentifier) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.ImageIdentifier
 
compareTo(Script) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.ScriptImmutable
 
compareTo(Attachment) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
 
compareTo(SearchDomainSearchResult) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchDomainSearchResult
 
compareTo(DatasetImageRepresentationFormats) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetImageRepresentationFormats
 
compareTo(FeatureInformation) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureInformation
 
compareTo(ImageChannel) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageChannel
 
compareTo(WellPosition) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.WellPosition
 
Complete - Enum in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset
 
CompleteSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search
 
CompleteSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.CompleteSearchCriteria
 
CompositeCommandFactory - Class in ch.systemsx.cisd.openbis.dss.client.api.cli
A command factory that wraps sub-command factories.
CompositeCommandFactory(String, List<ICommandFactory>) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.cli.CompositeCommandFactory
Constructor.
COMPOUND - Static variable in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
Material identifier for a compound.
COMPOUND - Static variable in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.MaterialTypeIdentifier
Material identifier for a compound.
computeHyperRowLength(int[]) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
 
computeIndex(int...) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
Computes the linear index for the multi-dimensional indices provided.
computeIndex(int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
Computes the linear index for the two-dimensional (indexX, indexY) provided.
computeIndex(int, int, int) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
Computes the linear index for the three-dimensional (indexX, indexY, indexZ) provided.
computeReverseIndex(int) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
Computes the multi-dimensional index from the linearIndex.
configureUI(IManagedProperty, IEntityPropertyAdaptor) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.IManagedPropertyEvaluator
 
confirmDeletions(String, List<? extends IDeletionId>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Confirms deletions with the provided IDeletionId ids (i.e.
ConfirmDeletionsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.confirm
 
ConfirmDeletionsOperation(List<? extends IDeletionId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.confirm.ConfirmDeletionsOperation
 
ConfirmDeletionsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.confirm
 
ConfirmDeletionsOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.confirm.ConfirmDeletionsOperationResult
 
Constants - Class in ch.systemsx.cisd.openbis.plugin.proteomics.server.api.v1
 
Constants() - Constructor for class ch.systemsx.cisd.openbis.plugin.proteomics.server.api.v1.Constants
 
contained() - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.IDataAdaptor
Returns contained data sets of this data set.
contained() - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.ISampleAdaptor
Returns contained samples of this sample.
containedOfType(String) - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.IDataAdaptor
Returns contained data sets of this data set.
containedOfType(String) - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.ISampleAdaptor
Returns contained samples of this sample.
container() - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.IDataAdaptor
Deprecated.
container() - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.ISampleAdaptor
Returns the container sample, or null if not exists.
containers() - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.IDataAdaptor
Returns the containers data sets of this data set.
contains(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view.AbstractCollectionView
 
containsAll(Collection<?>) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view.AbstractCollectionView
 
containsKey(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationPersistentMap
 
containsTerm(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.VocabularyImmutable
 
containsTerm(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.VocabularyImmutable
 
containsTerm(String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1.IVocabularyImmutable
Check if there is a term with given code in this vocabulary.
containsTerm(String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IVocabularyImmutable
Check if there is a term with given code in this vocabulary.
containsValue(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationPersistentMap
 
ContentCopy - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset
 
ContentCopy() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.ContentCopy
 
ContentCopyCreation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create
 
ContentCopyCreation() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create.ContentCopyCreation
 
ContentCopyHistoryEntry - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.history
 
ContentCopyHistoryEntry() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.history.ContentCopyHistoryEntry
 
ContentCopyListUpdateValue - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.update
 
ContentCopyListUpdateValue() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.update.ContentCopyListUpdateValue
 
ContentCopyPermId - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.id
 
ContentCopyPermId(String) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.id.ContentCopyPermId
 
ContentCopySearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search
 
ContentCopySearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.ContentCopySearchCriteria
 
ControlledVocabularyPropertyType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
ControlledVocabularyPropertyType(ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType
 
ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
ControlledVocabularyPropertyType.VocabularyTerm - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
ControlledVocabularyPropertyTypeInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer
 
ConversionUtils - Class in ch.systemsx.cisd.etlserver.registrator.api.v1.impl
Utility methods to convert transaction-layer DTOs to objects accepted by openBIS.
ConversionUtils() - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
ConversionUtils - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
Utility methods to convert transaction-layer DTOs to objects accepted by openBIS.
ConversionUtils() - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convert(IDAOFactory, SearchableEntityKind, SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.server.api.v1.SearchCriteriaToDetailedSearchCriteriaTranslator
 
convertMatchClauseAttributeToAttributeSearchFieldKind(SearchCriteria.MatchClauseAttribute) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.SearchCriteriaToDetailedSearchCriteriaTranslator.DataSetAttributeTranslator
 
convertMatchClauseAttributeToAttributeSearchFieldKind(SearchCriteria.MatchClauseTimeAttribute) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.SearchCriteriaToDetailedSearchCriteriaTranslator.DataSetAttributeTranslator
 
convertMatchClauseAttributeToAttributeSearchFieldKind(SearchCriteria.MatchClauseAttribute) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.SearchCriteriaToDetailedSearchCriteriaTranslator.ExperimentAttributeTranslator
 
convertMatchClauseAttributeToAttributeSearchFieldKind(SearchCriteria.MatchClauseTimeAttribute) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.SearchCriteriaToDetailedSearchCriteriaTranslator.ExperimentAttributeTranslator
 
convertMatchClauseAttributeToAttributeSearchFieldKind(SearchCriteria.MatchClauseAttribute) - Method in interface ch.systemsx.cisd.openbis.generic.server.api.v1.SearchCriteriaToDetailedSearchCriteriaTranslator.IMatchClauseAttributeTranslator
 
convertMatchClauseAttributeToAttributeSearchFieldKind(SearchCriteria.MatchClauseTimeAttribute) - Method in interface ch.systemsx.cisd.openbis.generic.server.api.v1.SearchCriteriaToDetailedSearchCriteriaTranslator.IMatchClauseAttributeTranslator
 
convertMatchClauseAttributeToAttributeSearchFieldKind(SearchCriteria.MatchClauseAttribute) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.SearchCriteriaToDetailedSearchCriteriaTranslator.MaterialAttributeTranslator
 
convertMatchClauseAttributeToAttributeSearchFieldKind(SearchCriteria.MatchClauseTimeAttribute) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.SearchCriteriaToDetailedSearchCriteriaTranslator.MaterialAttributeTranslator
 
convertMatchClauseAttributeToAttributeSearchFieldKind(SearchCriteria.MatchClauseAttribute) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.SearchCriteriaToDetailedSearchCriteriaTranslator.SampleAttributeTranslator
 
convertMatchClauseAttributeToAttributeSearchFieldKind(SearchCriteria.MatchClauseTimeAttribute) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.SearchCriteriaToDetailedSearchCriteriaTranslator.SampleAttributeTranslator
 
convertPath(File, File, String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.server.api.v1.DssServiceRpcGeneric
 
convertPatternListToString(List<String>) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetTypeFilter
Takes a List of patterns and serializes them to a single string that this class can later reread.
convertStringToElements(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.IStructuredPropertyConverter
Converts the values of specified String object into a list of elements.
convertToDataSetBatchUpdatesDTO(DataSetUpdatable) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToDataSetBatchUpdatesDTO(DataSetUpdatable) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToDataSetUpdatesDTO(DataSetUpdatable) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToDataSetUpdatesDTO(DataSetUpdatable) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToDetailedSearchCriteria() - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.SearchCriteriaToDetailedSearchCriteriaTranslator
 
convertToElements(IManagedProperty) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.IStructuredPropertyConverter
Converts the values of specified property into a list of elements.
convertToExperimentUpdateDTO(ExperimentUpdatable) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToExperimentUpdateDTO(ExperimentUpdatable) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToFeatureVectorDatasetWellIdentifier(List<PlateWellReferenceWithDatasets>) - Method in interface ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.IScreeningOpenbisServiceFacade
Converts the given list of PlateWellReferenceWithDatasets into a list of FeatureVectorDatasetWellReference.
convertToFeatureVectorDatasetWellIdentifier(List<PlateWellReferenceWithDatasets>) - Method in class ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ScreeningOpenbisServiceFacade
 
convertToMaterialUpdateDTO(Material) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToMaterialUpdateDTO(Material) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToMetaprojectsImmutable(Collection<Metaproject>) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToMetaprojectsImmutable(Collection<Metaproject>) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToMetaprojectUpdatesDTO(Metaproject) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToMetaprojectUpdatesDTO(Metaproject) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToNewContainerDataSet(DataSetRegistrationDetails<?>, String) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToNewContainerDataSet(DataSetRegistrationDetails<?>, String) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToNewExperiment(Experiment) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToNewExperiment(Experiment) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToNewExternalData(DataSetRegistrationDetails<?>, String, StorageFormat, String) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToNewExternalData(DataSetRegistrationDetails<?>, String, StorageFormat, String) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToNewLinkDataSet(DataSetRegistrationDetails<?>, String) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToNewLinkDataSet(DataSetRegistrationDetails<?>, String) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToNewMaterial(Material) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToNewMaterial(Material) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToNewMetaproject(Metaproject) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToNewMetaproject(Metaproject) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToNewProject(Project) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToNewProject(Project) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToNewSample(Sample) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToNewSample(Sample) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToNewSpace(Space) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToNewSpace(Space) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
ConvertToolImageTransformer - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations
An IStreamingImageTransformer using the convert command line tool for transformations.
ConvertToolImageTransformer(String, ConvertToolImageTransformerFactory.ToolChoice) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ConvertToolImageTransformer
 
ConvertToolImageTransformer - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations
This class is obsolete, and should not be used.
ConvertToolImageTransformer(String, ConvertToolImageTransformerFactory.ToolChoice) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations.ConvertToolImageTransformer
 
ConvertToolImageTransformerFactory - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations
ConvertToolImageTransformerFactory(String) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ConvertToolImageTransformerFactory
ConvertToolImageTransformerFactory(String, ConvertToolImageTransformerFactory.ToolChoice) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ConvertToolImageTransformerFactory
 
ConvertToolImageTransformerFactory - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations
This class is obsolete, and should not be used.
ConvertToolImageTransformerFactory(String) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations.ConvertToolImageTransformerFactory
ConvertToolImageTransformerFactory(String, ConvertToolImageTransformerFactory.ToolChoice) - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations.ConvertToolImageTransformerFactory
 
ConvertToolImageTransformerFactory.ToolChoice - Enum in ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations
An enum to choose which of the two tools, ImageMagick or GraphicsMagick, to prefer or to enforce.
ConvertToolImageTransformerFactory.ToolChoice - Enum in ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations
An enum to choose which of the two tools, ImageMagick or GraphicsMagick, to prefer or to enforce.
convertToProjectUpdateDTO(Project) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToProjectUpdateDTO(Project) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToSampleUpdateDTO(Sample) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ConversionUtils
 
convertToSampleUpdateDTO(Sample) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ConversionUtils
 
convertToString(List<IElement>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.IStructuredPropertyConverter
 
convertToWellPositions(List<WellIdentifier>) - Method in interface ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.IScreeningOpenbisServiceFacade
Converts the given WellIdentifiers to WellPositions
convertToWellPositions(List<WellIdentifier>) - Method in class ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ScreeningOpenbisServiceFacade
 
copyByteToChar(byte[], int, char[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Copies a range from an array of byte into an array of char.
copyByteToDouble(byte[], int, double[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Copies a range from an array of byte into an array of double.
copyByteToFloat(byte[], int, float[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Copies a range from an array of byte into an array of float.
copyByteToInt(byte[], int, int[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Copies a range from an array of byte into an array of int.
copyByteToLong(byte[], int, long[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Copies a range from an array of byte into an array of long.
copyByteToShort(byte[], int, short[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Copies a range from an array of byte into an array of short.
copyCharToByte(char[], int, byte[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Copies a range from an array of char into an array of byte.
copyDoubleToByte(double[], int, byte[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Copies a range from an array of double into an array of byte.
copyFloatToByte(float[], int, byte[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Copies a range from an array of float into an array of byte.
copyIntToByte(int[], int, byte[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Copies a range from an array of int into an array of byte.
copyItems(Collection<T>, Collection<T>, Integer, Integer) - Static method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view.AbstractCollectionView
 
copyLongToByte(long[], int, byte[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Copies a range from an array of long into an array of byte.
copyResourceToFile(String, RandomAccessFile) - Static method in class ch.systemsx.cisd.base.utilities.ResourceUtilities
Copies the resource with the given name to a file on the file system..
copyResourceToTempFile(String, String, String) - Static method in class ch.systemsx.cisd.base.utilities.ResourceUtilities
Copies the resource with the given name to a temporary file.
copyResourceToTempFile(String, Path, String, String, boolean) - Static method in class ch.systemsx.cisd.base.utilities.ResourceUtilities
Copies the resource with the given name to a temporary file.
copyShortToByte(short[], int, byte[], int, int, NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Copies a range from an array of short into an array of byte.
corePoolSize(int) - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadPoolExecutor
Same as ThreadPoolExecutor.setCorePoolSize(int), but returns the object itself for chaining.
count(Integer) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.FetchOptions
 
countNumberOfSamplesForType(String, String) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationService
 
countNumberOfSamplesForType(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
Returns number of samples for a sample type code.
create(String) - Method in class ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase
Creates a File with name in the working directory.
create(Experiment) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.gui.model.Identifier
 
create(Sample) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.gui.model.Identifier
 
create(DataSet) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.gui.model.Identifier
 
create(String, String, String) - Static method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.EncapsulatedCommonServer
 
create(ICommonServer, String) - Static method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.EncapsulatedCommonServer
 
create(String, String, String) - Static method in class ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.FacadeFactory
Creates a facade for specified server URL, user Id, and password.
create(String, String) - Static method in class ch.systemsx.cisd.openbis.plugin.proteomics.client.api.v1.FacadeFactory
Creates a facade for specified url and sessionToken.
create(String, String, String) - Static method in class ch.systemsx.cisd.openbis.plugin.query.client.api.v1.FacadeFactory
Creates a facade for specified server URL, user Id, and password.
create(String, String) - Static method in class ch.systemsx.cisd.openbis.plugin.query.client.api.v1.FacadeFactory
Creates a facade for specified url and sessionToken.
createAnyFieldMatch(String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Factory method to create a MatchClause matching against any property or attribute.
createAnyPropertyMatch(String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Factory method to create a MatchClause matching against any property.
createArrayDeserializer(DeserializationContext, ArrayType, BeanDescription) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.deserializer.JsonDeserializerFactory
 
createAttributeMatch(SearchCriteria.MatchClauseAttribute, String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Factory method to create a MatchClause matching against a specific attribute.
createAuthorizationGroups(String, List<AuthorizationGroupCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates authorization groups basing on the provided AuthorizationGroupCreation objects.
CreateAuthorizationGroupsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.create
 
CreateAuthorizationGroupsOperation(AuthorizationGroupCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.create.CreateAuthorizationGroupsOperation
 
CreateAuthorizationGroupsOperation(List<AuthorizationGroupCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.create.CreateAuthorizationGroupsOperation
 
CreateAuthorizationGroupsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.create
 
CreateAuthorizationGroupsOperationResult(List<AuthorizationGroupPermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.create.CreateAuthorizationGroupsOperationResult
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.search.AuthorizationGroupSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.AbstractCompositeSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.AbstractDataSetSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.ContentCopySearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.DataSetTypeSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.ExternalDmsSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.FileFormatTypeSearchCriteria
Deprecated.
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.LinkedDataSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.LocatorTypeSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.PhysicalDataSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.StorageFormatSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.search.DataStoreSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.search.DeletionSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.search.AbstractEntityTypeSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.search.EntityTypeSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.search.ExperimentSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.search.ExperimentTypeSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.global.search.GlobalSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.material.search.MaterialSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.material.search.MaterialTypeSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.objectkindmodification.search.ObjectKindModificationSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.search.OperationExecutionSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.person.search.ModifierSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.person.search.PersonSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.person.search.RegistratorSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.search.PluginSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.project.search.ProjectSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.property.search.PropertyAssignmentSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.property.search.PropertyTypeSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.query.search.QuerySearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.search.RoleAssignmentSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.search.AbstractSampleSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.search.SampleTypeSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.search.SemanticAnnotationSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.search.AggregationServiceSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.search.CustomASServiceSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.search.ProcessingServiceSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.search.ReportingServiceSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.search.SearchDomainServiceSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.space.search.SpaceSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.search.TagSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.search.VocabularySearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.search.VocabularyTermSearchCriteria
 
createBuilder() - Method in class ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.search.DataSetFileSearchCriteria
 
createChannel(String) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.SimpleImageDataConfig
Creates channel description for a given code.
createCodes(String, String, EntityKind, int) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Generates identifiers that are unique for a given entity kind and consist of a prefix and a sequence generated number (e.g.
CreateCodesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.entity.create
 
CreateCodesOperation(String, EntityKind, int) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.entity.create.CreateCodesOperation
 
CreateCodesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.entity.create
 
CreateCodesOperationResult(List<String>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.entity.create.CreateCodesOperationResult
 
createCollectionDeserializer(DeserializationContext, CollectionType, BeanDescription) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.deserializer.JsonDeserializerFactory
 
createCollectionLikeDeserializer(DeserializationContext, CollectionLikeType, BeanDescription) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.deserializer.JsonDeserializerFactory
 
createComboBoxInputField(String, String[]) - Method in interface ch.systemsx.cisd.openbis.generic.shared.basic.dto.api.IManagedInputWidgetDescriptionFactory
 
createDataSetChildCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createDataSetContainerCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createDataSetLink(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.IElementFactory
 
createDataSetParentCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createDataSetRegistrationService(DataSetFile, DataSetInformation, IDelegatedActionWithResult<Boolean>, ITopLevelDataSetRegistratorDelegate) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JavaTopLevelDataSetHandlerV2
Create a V2 registration service.
createDataSetRegistrationService(DataSetFile, DataSetInformation, IDelegatedActionWithResult<Boolean>, ITopLevelDataSetRegistratorDelegate) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
Create a registration service that includes a python interpreter (we need the interpreter in the service so we can use it in error handling).
createDataSets(String, List<DataSetCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates data sets basing on the provided DataSetCreation objects.
createDataSets(String, List<FullDataSetCreation>) - Method in interface ch.ethz.sis.openbis.generic.dssapi.v3.IDataStoreServerApi
Creates full data sets (i.e.
CreateDataSetsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create
 
CreateDataSetsOperation(DataSetCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create.CreateDataSetsOperation
 
CreateDataSetsOperation(List<DataSetCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create.CreateDataSetsOperation
 
CreateDataSetsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create
 
CreateDataSetsOperationResult(List<DataSetPermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create.CreateDataSetsOperationResult
 
createDataSetTypes(String, List<DataSetTypeCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates data set types basing on the provided DataSetTypeCreation objects.
CreateDataSetTypesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create
 
CreateDataSetTypesOperation(DataSetTypeCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create.CreateDataSetTypesOperation
 
CreateDataSetTypesOperation(List<DataSetTypeCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create.CreateDataSetTypesOperation
 
CreateDataSetTypesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create
 
CreateDataSetTypesOperationResult(List<EntityTypePermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create.CreateDataSetTypesOperationResult
 
createDataSetTypeValidationError(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
 
createDefault() - Static method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.ImageStorageConfiguraton
Returns the default configuration.
createDirectoryInUnitTestRoot(String) - Method in class ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase
Creates a directory in the unit test root directory "targets/unit-test-wd"
createDirectoryResponse() - Method in interface ch.systemsx.cisd.openbis.dss.generic.server.fs.api.IResolverContext
Creates an empty directory response.
createDssService(String) - Method in interface ch.systemsx.cisd.openbis.dss.screening.shared.api.internal.IDssServiceRpcScreeningFactory
 
createElement(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.IElementFactory
 
createEmailSender() - Method in interface ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api.IMailService
 
createExceptionFromJson(JsonNode) - Static method in class ch.ethz.sis.openbis.generic.dssapi.v3.fastdownload.FastDownloadUtils
 
createExperimentCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createExperimentLink(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.IElementFactory
 
createExperiments(String, List<ExperimentCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates experiments basing on the provided ExperimentCreation objects.
createExperiments(String, String, String, boolean, String) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.plugin.service.IImportService
 
CreateExperimentsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create
 
CreateExperimentsOperation(ExperimentCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create.CreateExperimentsOperation
 
CreateExperimentsOperation(List<ExperimentCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create.CreateExperimentsOperation
 
CreateExperimentsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create
 
CreateExperimentsOperationResult(List<ExperimentPermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create.CreateExperimentsOperationResult
 
createExperimentTypes(String, List<ExperimentTypeCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates experiment types basing on the provided ExperimentTypeCreation objects.
CreateExperimentTypesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create
 
CreateExperimentTypesOperation(ExperimentTypeCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create.CreateExperimentTypesOperation
 
CreateExperimentTypesOperation(List<ExperimentTypeCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create.CreateExperimentTypesOperation
 
CreateExperimentTypesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create
 
CreateExperimentTypesOperationResult(List<EntityTypePermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create.CreateExperimentTypesOperationResult
 
createExternalDataManagementSystems(String, List<ExternalDmsCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates external data management systems basing on the provided ExternalDmsCreation objects.
CreateExternalDmsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.create
 
CreateExternalDmsOperation(ExternalDmsCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.create.CreateExternalDmsOperation
 
CreateExternalDmsOperation(List<ExternalDmsCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.create.CreateExternalDmsOperation
 
CreateExternalDmsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.create
 
CreateExternalDmsOperationResult(List<ExternalDmsPermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.create.CreateExternalDmsOperationResult
 
createFastDownloadSession(String, List<? extends IDataSetFileId>, FastDownloadSessionOptions) - Method in interface ch.ethz.sis.openbis.generic.dssapi.v3.IDataStoreServerApi
Creates a download session for fast download of the requested files.
createFeaturesBuilder() - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.IImagingDatasetFactory
Allows to define feature vectors of one image analysis dataset.
createFeaturesBuilder() - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v2.IImagingDatasetFactory
Allows to define feature vectors of one image analysis dataset.
createFeatureVectorDatasetDetails(IFeaturesBuilder) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.IImagingDatasetFactory
Creates feature vector dataset details by using the specified builder.
createFeatureVectorDatasetDetails(String, Properties) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.IImagingDatasetFactory
Creates feature vector dataset details by parsing the specified CSV file.
createFeatureVectorDatasetDetails(IFeaturesBuilder) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v2.IImagingDatasetFactory
Creates feature vector dataset details by using the specified builder.
createFeatureVectorDatasetDetails(String, Properties) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v2.IImagingDatasetFactory
Creates feature vector dataset details by parsing the specified CSV file.
createFileResponse(IHierarchicalContentNode, IHierarchicalContent) - Method in interface ch.systemsx.cisd.openbis.dss.generic.server.fs.api.IResolverContext
 
createFileValidationError(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
 
createFilterAndRefreshButtonPanel(JTextField, JButton) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.gui.AbstractEntityPickerDialog
 
createFromAugmentedCode(String) - Static method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ExperimentIdentifier
Creates an ExperimentIdentifier from the given augmentedCode.
createFromAugmentedCode(String) - Static method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateIdentifier
Creates a PlateIdentifier from the given augmentedCode.
createFromCartesianDimensions(int, int) - Static method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Geometry
Creates a new instance from the given cartesian dimensions.
createFromCartesianDimensions(int[]) - Static method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Geometry
Creates a new instance from the given cartesian dimensions.
createFromIndex(int) - Static method in enum ch.systemsx.cisd.openbis.dss.etl.dto.api.ChannelColor
 
createFromIndex(int) - Static method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.ChannelColor
Deprecated.
 
createFromPermId(String) - Static method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ExperimentIdentifier
Creates an ExperimentIdentifier from the given permId.
createFromPermId(String) - Static method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateIdentifier
Creates a PlateIdentifier from the given permId.
createFromPlateGeometryString(String) - Static method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Geometry
Creates a new instance from the given number of rows and columns.
createFromRowColDimensions(int, int) - Static method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Geometry
Creates a new instance from the given number of rows and columns.
createHardLink(String, String) - Static method in class ch.systemsx.cisd.base.unix.Unix
Creates a hard link linkName that points to fileName.
createImageRegistrationDetails(SimpleImageDataConfig, File) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.IImagingDatasetFactory
Deprecated.
createImageRegistrationDetails(SimpleImageDataConfig, File) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v2.IImagingDatasetFactory
Deprecated.
createJythonDataSetRegistrationServiceV2(DataSetFile, DataSetInformation, IDelegatedActionWithResult<Boolean>, ITopLevelDataSetRegistratorDelegate, IJythonInterpreter, TopLevelDataSetRegistratorGlobalState) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
Create a Jython registration service that includes access to the interpreter.
createLimited(Collection<T>, Integer, Integer) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view.AbstractCollectionView
 
createLimited(Collection<T>, Integer, Integer) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view.ListView
 
createLimited(Collection<T>, Integer, Integer) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view.SetView
 
createLogger(IInvocationLoggerContext) - Method in class ch.systemsx.cisd.openbis.dss.generic.server.api.v1.DssServiceRpcGeneric
 
createLogger(IInvocationLoggerContext) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationChangingService
 
createLogger(IInvocationLoggerContext) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationService
 
createLogger(IInvocationLoggerContext) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.server.api.v1.ProteomicsDataService
 
createLogger(IInvocationLoggerContext) - Method in class ch.systemsx.cisd.openbis.plugin.query.server.api.v1.QueryApiServer
 
createMapDeserializer(DeserializationContext, MapType, BeanDescription) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.deserializer.JsonDeserializerFactory
 
createMapLikeDeserializer(DeserializationContext, MapLikeType, BeanDescription) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.deserializer.JsonDeserializerFactory
 
createMaterialLink(String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.IElementFactory
 
createMaterials(String, List<MaterialCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates materials basing on the provided MaterialCreation objects.
createMaterials(String, String, String, boolean, boolean, String) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.plugin.service.IImportService
 
CreateMaterialsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.material.create
 
CreateMaterialsOperation(MaterialCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.material.create.CreateMaterialsOperation
 
CreateMaterialsOperation(List<MaterialCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.material.create.CreateMaterialsOperation
 
CreateMaterialsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.material.create
 
CreateMaterialsOperationResult(List<MaterialPermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.material.create.CreateMaterialsOperationResult
 
createMaterialTypes(String, List<MaterialTypeCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates material types basing on the provided MaterialTypeCreation objects.
CreateMaterialTypesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.material.create
 
CreateMaterialTypesOperation(MaterialTypeCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.material.create.CreateMaterialTypesOperation
 
CreateMaterialTypesOperation(List<MaterialTypeCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.material.create.CreateMaterialTypesOperation
 
CreateMaterialTypesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.material.create
 
CreateMaterialTypesOperationResult(List<EntityTypePermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.material.create.CreateMaterialTypesOperationResult
 
createMetaproject(String, String, String) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.Metaproject
 
createMetaproject(String, String, String) - Static method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.Metaproject
 
createMetaproject(String, String, String) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationChangingService
 
createMetaproject(String, String, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Creates a new metaproject.
createMultilineTextInputField(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.basic.dto.api.IManagedInputWidgetDescriptionFactory
 
createNewDataSet() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
Create a new data set for registration in openBIS.
createNewDataSet(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
Create a new data set with the specified code.
createNewDataSet(String, DataSetKind) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
 
createNewDataSet(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
Create a new data set with the specified type and code.
createNewDataSet(String, String, DataSetKind) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
 
createNewDataSet() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewDataSet(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewDataSet(String, DataSetKind) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewDataSet(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewDataSet(String, String, DataSetKind) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewDataSet(DataSetRegistrationDetails<T>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewDataSet(IDataSetRegistrationDetailsFactory<T>, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewDataSet() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewDataSet(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewDataSet(String, DataSetKind) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewDataSet(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewDataSet(String, String, DataSetKind) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewDataSet() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Create a new data set for registration in openBIS.
createNewDataSet(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Create a new data set with the specified code.
createNewDataSet(String, DataSetKind) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
 
createNewDataSet(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Create a new data set with the specified type and code.
createNewDataSet(String, String, DataSetKind) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
 
createNewDataSet() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewDataSet(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewDataSet(String, DataSetKind) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewDataSet(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewDataSet(String, String, DataSetKind) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewDataSet(DataSetRegistrationDetails<T>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewDataSet(IDataSetRegistrationDetailsFactory<T>, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewDataSetType(String) - Method in interface ch.systemsx.cisd.openbis.generic.server.jython.api.v1.IMasterDataRegistrationTransaction
Create a new data set type to register with the openBIS AS.
createNewDataSetType(String) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataRegistrationTransaction
 
createNewDirectory(IDataSet, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
Create a new directory and return the path.
createNewDirectory(IDataSet, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewDirectory(IDataSet, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewDirectory(IDataSet, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Create a new directory and return the path.
createNewDirectory(IDataSet, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewExperiment(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
Create a new experiment to register with the openBIS AS.
createNewExperiment(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewExperiment(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewExperiment(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Create a new experiment to register with the openBIS AS.
createNewExperiment(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewExperimentType(String) - Method in interface ch.systemsx.cisd.openbis.generic.server.jython.api.v1.IMasterDataRegistrationTransaction
Create a new experiment type to register with the openBIS AS.
createNewExperimentType(String) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataRegistrationTransaction
 
createNewExternalDataManagementSystem(String) - Method in interface ch.systemsx.cisd.openbis.generic.server.jython.api.v1.IMasterDataRegistrationTransaction
Create a new external data management system to register with the openBIS AS.
createNewExternalDataManagementSystem(String) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataRegistrationTransaction
 
createNewFeatureListDataSet(FeatureListDataConfig) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v2.IImagingDataSetRegistrationTransactionV2
Creates a new data set, containing the list of features based on the FeatureListDataConfig
createNewFeatureVectorDataSet(SimpleFeatureVectorDataConfig, File) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v2.IImagingDataSetRegistrationTransactionV2
Creates a new feature vector data set based on either the FeaturesBuilder provided by the specified SimpleFeatureVectorDataConfig or the specified file.
createNewFile(IDataSet, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
Create a new empty file and return the path.
createNewFile(IDataSet, String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
Create a new empty file and return the path.
createNewFile(IDataSet, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewFile(IDataSet, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewFile(IDataSet, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewFile(IDataSet, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewFile(IDataSet, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Create a new empty file and return the path.
createNewFile(IDataSet, String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Create a new empty file and return the path.
createNewFile(IDataSet, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewFile(IDataSet, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewFileFormatType(String) - Method in interface ch.systemsx.cisd.openbis.generic.server.jython.api.v1.IMasterDataRegistrationTransaction
Create a new file format type to register with the openBIS AS.
createNewFileFormatType(String) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataRegistrationTransaction
 
createNewImageDataSet(SimpleImageDataConfig, File) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.IImagingDataSetRegistrationTransaction
Creates a new image dataset.
createNewImageDataSet(DataSetRegistrationDetails<ImageDataSetInformation>) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.IImagingDataSetRegistrationTransaction
Deprecated.
createNewImageDataSet(SimpleImageDataConfig, File) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v2.IImagingDataSetRegistrationTransactionV2
Creates a new image data set.
createNewImageDataSetAndMoveFile(SimpleImageDataConfig, File) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v2.IImagingDataSetRegistrationTransactionV2
Creates a new image data set.
createNewImageDataSetFromDataSet(SimpleImageDataConfig, IImageDataSet) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v2.IImagingDataSetRegistrationTransactionV2
Creates a new image data set container based on specified configuration and a specified new image data set container.
createNewLink(IDataSet, String, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewLink(IDataSet, String, String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Create a new symbolic link and return the path.
createNewLink(IDataSet, String, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewMaterial(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
Create a new material to register with the openBIS AS.
createNewMaterial(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewMaterial(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewMaterial(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Create a new material to register with the openBIS AS.
createNewMaterial(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewMaterialType(String) - Method in interface ch.systemsx.cisd.openbis.generic.server.jython.api.v1.IMasterDataRegistrationTransaction
Create a new material type to register with the openBIS AS.
createNewMaterialType(String) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataRegistrationTransaction
 
createNewMetaproject(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
Creates the new metaproject for the current user.
createNewMetaproject(String, String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
Creates the new metaproject for the specified user.
createNewMetaproject(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewMetaproject(String, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewMetaproject(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewMetaproject(String, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewMetaproject(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Creates the new metaproject for the current user.
createNewMetaproject(String, String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Creates the new metaproject for the specified user.
createNewMetaproject(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewMetaproject(String, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewOverviewImageDataSet(SimpleImageDataConfig, File) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.IImagingDataSetRegistrationTransaction
 
createNewOverviewImageDataSet(SimpleImageDataConfig, File) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v2.IImagingDataSetRegistrationTransactionV2
Creates a new overview image data set.
createNewProject(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
Create a new project to register with the openBIS AS.
createNewProject(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewProject(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewProject(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Create a new project to register with the openBIS AS.
createNewProject(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewProjectSampleWithGeneratedCode(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewProjectSampleWithGeneratedCode(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Create a new project sample to register with the openBIS AS.
createNewProjectSampleWithGeneratedCode(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewPropertyType(String, DataType) - Method in interface ch.systemsx.cisd.openbis.generic.server.jython.api.v1.IMasterDataRegistrationTransaction
Create a new property type to register with the openBIS AS.
createNewPropertyType(String, DataType) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataRegistrationTransaction
 
createNewSample(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
Create a new sample to register with the openBIS AS.
createNewSample(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewSample(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewSample(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Create a new sample to register with the openBIS AS.
createNewSample(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewSampleType(String) - Method in interface ch.systemsx.cisd.openbis.generic.server.jython.api.v1.IMasterDataRegistrationTransaction
Create a new sample type to register with the openBIS AS.
createNewSampleType(String) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataRegistrationTransaction
 
createNewSampleWithGeneratedCode(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
Create a new sample to register with the openBIS AS.
createNewSampleWithGeneratedCode(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewSampleWithGeneratedCode(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewSampleWithGeneratedCode(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Create a new sample to register with the openBIS AS.
createNewSampleWithGeneratedCode(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewSpace(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
Create a new space to register with the openBIS AS.
createNewSpace(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewSpace(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewSpace(String, String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Create a new space to register with the openBIS AS.
createNewSpace(String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewVocabulary(String) - Method in interface ch.systemsx.cisd.openbis.generic.server.jython.api.v1.IMasterDataRegistrationTransaction
Create a new sample type to register with the openBIS AS.
createNewVocabulary(String) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataRegistrationTransaction
 
createNewVocabularyTerm() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IDataSetRegistrationTransaction
Creates a new vocabulary term, which has to be assigned to a IVocabulary.
createNewVocabularyTerm() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
createNewVocabularyTerm() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
createNewVocabularyTerm() - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2
Creates a new vocabulary term, which has to be assigned to a IVocabulary.
createNewVocabularyTerm() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
createNewVocabularyTerm(String) - Method in interface ch.systemsx.cisd.openbis.generic.server.jython.api.v1.IMasterDataRegistrationTransaction
Create a new vocabulary term.
createNewVocabularyTerm(String) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.MasterDataRegistrationTransaction
 
createNonExistingFileResponse(String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.server.fs.api.IResolverContext
Creates an object that should be returned when the requested path doesn't exist or user has no access to.
CreateObjectsOperation<C extends IObjectCreation> - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.create
 
CreateObjectsOperation(C...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.create.CreateObjectsOperation
 
CreateObjectsOperation(List<C>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.create.CreateObjectsOperation
 
CreateObjectsOperationResult<ID extends IObjectId> - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.create
 
CreateObjectsOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.create.CreateObjectsOperationResult
 
CreateObjectsOperationResult(List<ID>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.create.CreateObjectsOperationResult
 
createOrUpdateExternalDataManagementSystem(ExternalDataManagementSystem) - Method in class ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl.EncapsulatedCommonServer
 
createOwnerValidationError(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
 
CreatePermIdsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.entity.create
 
CreatePermIdsOperation(int) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.entity.create.CreatePermIdsOperation
 
CreatePermIdsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.entity.create
 
CreatePermIdsOperationResult(List<String>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.entity.create.CreatePermIdsOperationResult
 
createPermIdStrings(String, int) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Generates globally unique identifiers that consist of a timestamp and a sequence generated number (e.g.
createPersons(String, List<PersonCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates persons basing on the provided PersonCreation objects.
CreatePersonsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.person.create
 
CreatePersonsOperation(PersonCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.person.create.CreatePersonsOperation
 
CreatePersonsOperation(List<PersonCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.person.create.CreatePersonsOperation
 
CreatePersonsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.person.create
 
CreatePersonsOperationResult(List<PersonPermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.person.create.CreatePersonsOperationResult
 
createPlateImageReferences(ImageDatasetReference) - Method in interface ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.IScreeningOpenbisServiceFacade
Returns the list of all plate image references for the given imageDatasetRef.
createPlateImageReferences(ImageDatasetReference, List<String>, List<WellPosition>) - Method in interface ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.IScreeningOpenbisServiceFacade
Returns the list of all plate image references for the given imageDatasetRef (all tiles), the given channelCodesOrNull and wellsOrNull.
createPlateImageReferences(ImageDatasetReference, ImageDatasetMetadata, List<String>, List<WellPosition>) - Method in interface ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.IScreeningOpenbisServiceFacade
Returns the list of all plate image references for the given imageDatasetRef (all tiles), the given channelCodesOrNull and wellsOrNull.
createPlateImageReferences(IImageDatasetIdentifier, List<String>, List<WellPosition>) - Method in interface ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.IScreeningOpenbisServiceFacade
Returns the list of all plate image references for the given imageDatasetId (all tiles), and the given channelCodesOrNull and wellsToUse.
createPlateImageReferences(IImageDatasetIdentifier, ImageDatasetMetadata, List<String>, List<WellPosition>) - Method in interface ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.IScreeningOpenbisServiceFacade
Returns the list of all plate image references for the given imageDatasetId (all tiles), and the given channelCodesOrNull and wellsToUse.
createPlateImageReferences(ImageDatasetReference) - Method in class ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ScreeningOpenbisServiceFacade
 
createPlateImageReferences(ImageDatasetReference, List<String>, List<WellPosition>) - Method in class ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ScreeningOpenbisServiceFacade
 
createPlateImageReferences(ImageDatasetReference, ImageDatasetMetadata, List<String>, List<WellPosition>) - Method in class ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ScreeningOpenbisServiceFacade
 
createPlateImageReferences(IImageDatasetIdentifier, List<String>, List<WellPosition>) - Method in class ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ScreeningOpenbisServiceFacade
 
createPlateImageReferences(IImageDatasetIdentifier, ImageDatasetMetadata, List<String>, List<WellPosition>) - Method in class ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ScreeningOpenbisServiceFacade
 
createPlugins(String, List<PluginCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates plugins (i.e.
CreatePluginsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.create
 
CreatePluginsOperation(PluginCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.create.CreatePluginsOperation
 
CreatePluginsOperation(List<PluginCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.create.CreatePluginsOperation
 
CreatePluginsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.create
 
CreatePluginsOperationResult(List<PluginPermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.create.CreatePluginsOperationResult
 
createProjects(String, List<ProjectCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates projects basing on the provided ProjectCreation objects.
CreateProjectsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.project.create
 
CreateProjectsOperation(ProjectCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.project.create.CreateProjectsOperation
 
CreateProjectsOperation(List<ProjectCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.project.create.CreateProjectsOperation
 
CreateProjectsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.project.create
 
CreateProjectsOperationResult(List<ProjectPermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.project.create.CreateProjectsOperationResult
 
createPropertyMatch(String, String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Factory method to create a MatchClause matching against a specific property.
createPropertyTypes(String, List<PropertyTypeCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates property types basing on the provided PropertyTypeCreation objects.
CreatePropertyTypesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.property.create
 
CreatePropertyTypesOperation(PropertyTypeCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.property.create.CreatePropertyTypesOperation
 
CreatePropertyTypesOperation(List<PropertyTypeCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.property.create.CreatePropertyTypesOperation
 
CreatePropertyTypesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.property.create
 
CreatePropertyTypesOperationResult(List<PropertyTypePermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.property.create.CreatePropertyTypesOperationResult
 
createPropertyValidationError(String, String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationError
 
createProxy(T) - Static method in class ch.systemsx.cisd.common.api.retry.RetryProxyFactory
 
createQueries(String, List<QueryCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates queries basing on the provided QueryCreation objects.
CreateQueriesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.query.create
 
CreateQueriesOperation(QueryCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.query.create.CreateQueriesOperation
 
CreateQueriesOperation(List<QueryCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.query.create.CreateQueriesOperation
 
CreateQueriesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.query.create
 
CreateQueriesOperationResult(List<QueryTechId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.query.create.CreateQueriesOperationResult
 
createRefreshButton() - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.AbstractEntityPickerDialog
 
createRegistrationDetails() - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2.ProgrammableDropboxObjectFactory
Factory method that creates a new registration details object.
createReportFromAggregationService(String, String, Map<String, Object>) - Method in class ch.systemsx.cisd.openbis.dss.generic.server.api.v1.DssServiceRpcGeneric
 
createReportFromAggregationService(String, String, Map<String, Object>) - Method in class ch.systemsx.cisd.openbis.dss.generic.server.api.v1.DssServiceRpcGenericLogger
 
createReportFromAggregationService(String, String, Map<String, Object>) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
Create the report from the specified aggregation service.
createReportFromAggregationService(AggregationServiceDescription, Map<String, Object>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
Executes the specified aggregation or ingestion service for the specified parameters and creates a report.
createReportFromAggregationService(String, String, String, Map<String, Object>) - Method in class ch.systemsx.cisd.openbis.plugin.query.server.api.v1.QueryApiServer
 
createReportFromAggregationService(String, String, String, Map<String, Object>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.IQueryApiServer
Executes the specified aggregation or ingestion service for the specified parameters and creates a report.
createReportFromDataSets(String, String, List<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.server.api.v1.DssServiceRpcGeneric
 
createReportFromDataSets(String, String, List<String>) - Method in class ch.systemsx.cisd.openbis.dss.generic.server.api.v1.DssServiceRpcGenericLogger
 
createReportFromDataSets(String, String, List<String>) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
Creates for the specified data sets a report.
createReportFromDataSets(ReportDescription, List<String>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
Creates for the specified data sets and specified report description a report.
createReportFromDataSets(String, List<String>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
Creates for the specified data sets and specified report key a report.
createReportFromDataSets(String, String, String, List<String>) - Method in class ch.systemsx.cisd.openbis.plugin.query.server.api.v1.QueryApiServer
 
createReportFromDataSets(String, String, List<String>) - Method in class ch.systemsx.cisd.openbis.plugin.query.server.api.v1.QueryApiServer
 
createReportFromDataSets(String, String, String, List<String>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.IQueryApiServer
Creates for the specified data sets a report.
createReportFromDataSets(String, String, List<String>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.IQueryApiServer
Creates for the specified data sets a report.
createRescaleGrayscaleIntensity(int, int, String) - Static method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ImageTransformationBuffer
Creates a transformation which converts grayscale image pixel intensities from the range [blackPointIntensity, whitePointIntensity] to 8 bit color depth.
createRoleAssignments(String, List<RoleAssignmentCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates role assignments basing on the provided RoleAssignmentCreation objects.
CreateRoleAssignmentsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.create
 
CreateRoleAssignmentsOperation(RoleAssignmentCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.create.CreateRoleAssignmentsOperation
 
CreateRoleAssignmentsOperation(List<RoleAssignmentCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.create.CreateRoleAssignmentsOperation
 
CreateRoleAssignmentsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.create
 
CreateRoleAssignmentsOperationResult(List<RoleAssignmentTechId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.create.CreateRoleAssignmentsOperationResult
 
createSampleChildCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createSampleContainerCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createSampleCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createSampleLink(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.managed_property.api.IElementFactory
 
createSampleLister(PersonPE) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationService
 
createSampleParentCriteria(SearchCriteria) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
createSamples(String, List<SampleCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates samples basing on the provided SampleCreation objects.
createSamples(String, String, String, String, String, String, boolean, boolean, String) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.plugin.service.IImportService
 
CreateSamplesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create
 
CreateSamplesOperation(SampleCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create.CreateSamplesOperation
 
CreateSamplesOperation(List<SampleCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create.CreateSamplesOperation
 
CreateSamplesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create
 
CreateSamplesOperationResult(List<SamplePermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create.CreateSamplesOperationResult
 
createSampleTypes(String, List<SampleTypeCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates sample types basing on the provided SampleTypeCreation objects.
CreateSampleTypesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create
 
CreateSampleTypesOperation(SampleTypeCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create.CreateSampleTypesOperation
 
CreateSampleTypesOperation(List<SampleTypeCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create.CreateSampleTypesOperation
 
CreateSampleTypesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create
 
CreateSampleTypesOperationResult(List<EntityTypePermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create.CreateSampleTypesOperationResult
 
createSemanticAnnotations(String, List<SemanticAnnotationCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates semantic annotations basing on the provided SemanticAnnotationCreation objects.
CreateSemanticAnnotationsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.create
 
CreateSemanticAnnotationsOperation(SemanticAnnotationCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.create.CreateSemanticAnnotationsOperation
 
CreateSemanticAnnotationsOperation(List<SemanticAnnotationCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.create.CreateSemanticAnnotationsOperation
 
CreateSemanticAnnotationsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.create
 
CreateSemanticAnnotationsOperationResult(List<SemanticAnnotationPermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.create.CreateSemanticAnnotationsOperationResult
 
createService(Class<S>, String) - Method in class ch.systemsx.cisd.openbis.common.api.client.ServiceFinder
Creates a remote service implementing specified interface for specified server URL.
createService(Class<S>, String, long) - Method in class ch.systemsx.cisd.openbis.common.api.client.ServiceFinder
Creates a remote service implementing specified interface for specified server URL.
createService(Class<S>, String, IServicePinger<S>) - Method in class ch.systemsx.cisd.openbis.common.api.client.ServiceFinder
Creates a remote service implementing specified interface for specified server URL by using specified pinger for checking server connection.
createService(Class<S>, String, IServicePinger<S>, long) - Method in class ch.systemsx.cisd.openbis.common.api.client.ServiceFinder
Creates a remote service implementing specified interface for specified server URL by using specified pinger for checking server connection.
createServiceStub(Class<S>, String, long) - Method in class ch.systemsx.cisd.openbis.common.api.client.HttpInvokerBasedServiceStubFactory
 
createServiceStub(Class<S>, String, long) - Method in interface ch.systemsx.cisd.openbis.common.api.client.IServiceStubFactory
 
createServiceUrl(Class<S>, String, IServicePinger<S>, long) - Method in class ch.systemsx.cisd.openbis.common.api.client.ServiceFinder
 
createSpaces(String, List<SpaceCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates spaces basing on the provided SpaceCreation objects.
CreateSpacesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.space.create
 
CreateSpacesOperation(SpaceCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.space.create.CreateSpacesOperation
 
CreateSpacesOperation(List<SpaceCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.space.create.CreateSpacesOperation
 
CreateSpacesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.space.create
 
CreateSpacesOperationResult(List<SpacePermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.space.create.CreateSpacesOperationResult
 
createSymbolicLink(String, String) - Static method in class ch.systemsx.cisd.base.unix.Unix
Creates a symbolic link linkName that points to fileName.
createTags(String, List<TagCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates tags basing on the provided TagCreation objects.
CreateTagsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.create
 
CreateTagsOperation(TagCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.create.CreateTagsOperation
 
CreateTagsOperation(List<TagCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.create.CreateTagsOperation
 
CreateTagsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.create
 
CreateTagsOperationResult(List<TagPermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.create.CreateTagsOperationResult
 
createTemporaryIncomingDir(String) - Method in class ch.systemsx.cisd.etlserver.api.v1.PutDataSetService
 
createTextInputField(String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.basic.dto.api.IManagedInputWidgetDescriptionFactory
 
createTimeAttributeMatch(SearchCriteria.MatchClauseTimeAttribute, SearchCriteria.CompareMode, String, String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Factory method to create a MatchClause matching against registration or modification date.
createTransformer() - Method in interface ch.systemsx.cisd.base.image.IImageTransformerFactory
Creates a transformer object based on the attributes of the factory.
createTransformer() - Method in interface ch.systemsx.cisd.base.image.IStreamingImageTransformerFactory
Creates a transformer object based on the attributes of the factory.
createTransformer() - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.AutoRescaleIntensityImageTransformerFactory
 
createTransformer() - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.ConvertToolImageTransformerFactory
 
createTransformer() - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.transformations.IntensityRangeImageTransformerFactory
 
createTransformer() - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations.AutoRescaleIntensityImageTransformerFactory
 
createTransformer() - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations.ConvertToolImageTransformerFactory
 
createTransformer() - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations.IntensityRangeImageTransformerFactory
 
createTransformer() - Method in class ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ExampleImageTransformerFactory
 
createUploadedDataSet(String, UploadedDataSetCreation) - Method in interface ch.ethz.sis.openbis.generic.dssapi.v3.IDataStoreServerApi
Creates a data set which files have been already uploaded to data store server /store_share_file_upload servlet.
createValidatorFromScriptPaths(String[]) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
Factory method for creating a ValidationScriptRunner given a path to a script.
createValidatorFromScriptPaths(String[], boolean) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
Factory method for creating a ValidationScriptRunner given a path to a script.
createValidatorFromScriptString(String) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
Factory method for creating a ValidationScriptRunner given the script as a string.
createValidatorFromScriptString(String, boolean) - Static method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.validation.ValidationScriptRunner
Factory method for creating a ValidationScriptRunner given the script as a string.
createVocabularies(String, List<VocabularyCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates vocabularies and vocabulary terms (optionally) basing on the provided VocabularyCreation objects.
CreateVocabulariesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.create
 
CreateVocabulariesOperation(VocabularyCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.create.CreateVocabulariesOperation
 
CreateVocabulariesOperation(List<VocabularyCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.create.CreateVocabulariesOperation
 
CreateVocabulariesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.create
 
CreateVocabulariesOperationResult(List<VocabularyPermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.create.CreateVocabulariesOperationResult
 
createVocabularyTerms(String, List<VocabularyTermCreation>) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Creates vocabulary terms basing on the provided VocabularyTermCreation objects.
CreateVocabularyTermsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.create
 
CreateVocabularyTermsOperation(VocabularyTermCreation...) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.create.CreateVocabularyTermsOperation
 
CreateVocabularyTermsOperation(List<VocabularyTermCreation>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.create.CreateVocabularyTermsOperation
 
CreateVocabularyTermsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.create
 
CreateVocabularyTermsOperationResult(List<VocabularyTermPermId>) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.create.CreateVocabularyTermsOperationResult
 
createWaitingNode() - Static method in class ch.systemsx.cisd.openbis.dss.client.api.gui.UiUtilities
 
CreationId - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.id
 
CreationId(String) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.id.CreationId
 
criteria - Variable in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.AbstractCompositeSearchCriteria
 
CustomASService - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service
 
CustomASService() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.CustomASService
 
CustomASServiceCode - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.id
Custom AS service code.
CustomASServiceCode(String) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.id.CustomASServiceCode
 
CustomASServiceContext - Class in ch.ethz.sis.openbis.generic.asapi.v3.plugin.service.context
 
CustomASServiceContext() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.plugin.service.context.CustomASServiceContext
 
CustomASServiceExecutionOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service
 
CustomASServiceExecutionOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.CustomASServiceExecutionOptions
 
CustomASServiceFetchOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.fetchoptions
 
CustomASServiceFetchOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.fetchoptions.CustomASServiceFetchOptions
 
CustomASServiceSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.search
 
CustomASServiceSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.search.CustomASServiceSearchCriteria
 
CustomASServiceSortOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.fetchoptions
 
CustomASServiceSortOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.fetchoptions.CustomASServiceSortOptions
 
customImport(String, String, String, boolean, String) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.plugin.service.IImportService
 

D

daemonize() - Method in class ch.systemsx.cisd.base.namedthread.NamingThreadPoolExecutor
Sets the thread factory of this pool executor to daemon creation mode.
DATA_SET_METADATA_COLUMN - Static variable in class ch.systemsx.cisd.openbis.dss.client.api.gui.model.DataSetUploadTableModel
 
DATA_SET_OWNER_COLUMN - Static variable in class ch.systemsx.cisd.openbis.dss.client.api.gui.model.DataSetUploadTableModel
 
DATA_SET_PATH_COLUMN - Static variable in class ch.systemsx.cisd.openbis.dss.client.api.gui.model.DataSetUploadTableModel
 
DATA_SET_TYPE_COLUMN - Static variable in class ch.systemsx.cisd.openbis.dss.client.api.gui.model.DataSetUploadTableModel
 
DatabaseIdSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.query.search
 
DatabaseIdSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.query.search.DatabaseIdSearchCriteria
 
DataSet - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset
 
DataSet() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.DataSet
 
DataSet<T extends ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation> - Class in ch.systemsx.cisd.etlserver.registrator.api.v1.impl
A generic class that represents a data set for the registration API.
DataSet(DataSetRegistrationDetails<? extends T>, File, IEncapsulatedOpenBISService) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSet
 
dataSet - Variable in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetImmutable
 
DataSet<T extends ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation> - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
A generic class that represents a data set for the registration API.
DataSet(DataSetRegistrationDetails<? extends T>, File, IEncapsulatedOpenBISService) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSet
 
dataSet - Variable in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
 
DataSet - Class in ch.systemsx.cisd.openbis.dss.client.api.v1
A class that provides uniform access to data set metadata (from the openBIS AS) and data (from the openBIS DSS).
DataSet() - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
DataSet(IOpenbisServiceFacade, IDssComponent, DataSet, IDataSetDss) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
Constructor.
DataSet - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing a data set.
DataSet(DataSet.DataSetInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
Creates a new instance with the provided initializer
DataSet - Class in ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto
Date Set bean with properties, children and parents.
DataSet() - Constructor for class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataSet
 
DataSet.Connections - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
DataSet.DataSetInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new data set instance.
DataSetAccessGuard - Annotation Type in ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization
Annotation for service methods to automagically check that the user invoking the method has access to the data set.
DataSetArchiveOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.archive
 
DataSetArchiveOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.archive.DataSetArchiveOptions
 
DataSetAttributeTranslator() - Constructor for class ch.systemsx.cisd.openbis.generic.server.api.v1.SearchCriteriaToDetailedSearchCriteriaTranslator.DataSetAttributeTranslator
 
DataSetChildrenSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search
 
DataSetChildrenSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.DataSetChildrenSearchCriteria
 
DataSetCodeAndWellPositions - Class in ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto
Helper class for parsing strings containing data set code and well positions.
DataSetCodeAndWellPositions(String) - Constructor for class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DataSetCodeAndWellPositions
Creates an instane from the specified description.
DataSetCodeId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset
Identifies a data set by code.
DataSetCodeId(String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset.DataSetCodeId
 
DataSetCodeStringPredicate - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization
Predicate for checking that the current user has access to a data set specified by code.
DataSetCodeStringPredicate() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.DataSetCodeStringPredicate
 
DataSetContainerSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search
 
DataSetContainerSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.DataSetContainerSearchCriteria
 
DataSetCreation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create
 
DataSetCreation() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create.DataSetCreation
 
DataSetDeletionOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete
 
DataSetDeletionOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete.DataSetDeletionOptions
 
DataSetDss - Class in ch.systemsx.cisd.openbis.dss.client.api.v1.impl
 
DataSetDss(String, IDssServiceRpcGeneric, AuthenticatedState) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DataSetDss
 
DataSetFetchOption - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
DataSetFetchOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions
 
DataSetFetchOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions.DataSetFetchOptions
 
DataSetFetchOptions - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
DataSetFetchOptions() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOptions
 
DataSetFetchOptions(DataSetFetchOption...) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFetchOptions
 
DataSetFile - Class in ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile
 
DataSetFile() - Constructor for class ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.DataSetFile
 
DataSetFile - Class in ch.systemsx.cisd.etlserver.registrator
Wrapper that bundles two copies of incoming dataset file.
DataSetFile(File, File) - Constructor for class ch.systemsx.cisd.etlserver.registrator.DataSetFile
Creates the dataset file with original incoming and prestaging copy
DataSetFile(File) - Constructor for class ch.systemsx.cisd.etlserver.registrator.DataSetFile
Creates the dataset file without prestaging copy.
DataSetFileBlastSearchResultLocation - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Extension of DataSetFileBlastSearchResultLocation for BLAST search.
DataSetFileBlastSearchResultLocation() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFileBlastSearchResultLocation
 
DataSetFileCreation - Class in ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.create
 
DataSetFileCreation() - Constructor for class ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.create.DataSetFileCreation
 
DataSetFileDownload - Class in ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.download
 
DataSetFileDownload(DataSetFile, InputStream) - Constructor for class ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.download.DataSetFileDownload
 
DataSetFileDownloadOptions - Class in ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.download
 
DataSetFileDownloadOptions() - Constructor for class ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.download.DataSetFileDownloadOptions
 
DataSetFileDownloadReader - Class in ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.download
 
DataSetFileDownloadReader(InputStream) - Constructor for class ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.download.DataSetFileDownloadReader
 
DataSetFileDTO - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
Represents a reference to a file/folder within a data set.
DataSetFileDTO(String, String, boolean) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataSetFileDTO
 
DataSetFileDTOPredicate - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization
Predicate for checking that the current user has access to a data set specified by a DataSetFileDTO
DataSetFileDTOPredicate() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.DataSetFileDTOPredicate
 
DataSetFileFetchOptions - Class in ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.fetchoptions
 
DataSetFileFetchOptions() - Constructor for class ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.fetchoptions.DataSetFileFetchOptions
 
DataSetFilePermId - Class in ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.id
Data set file perm id.
DataSetFilePermId(IDataSetId) - Constructor for class ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.id.DataSetFilePermId
Data set root file perm id
DataSetFilePermId(IDataSetId, String) - Constructor for class ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.id.DataSetFilePermId
Data set file perm id
DataSetFileSearchCriteria - Class in ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.search
 
DataSetFileSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.search.DataSetFileSearchCriteria
 
DataSetFileSearchResultLocation - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Result location for a search in a sequence in a file in data set.
DataSetFileSearchResultLocation() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetFileSearchResultLocation
 
DataSetFileSortOptions - Class in ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.fetchoptions
 
DataSetFileSortOptions() - Constructor for class ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.fetchoptions.DataSetFileSortOptions
 
DatasetIdentifier - Class in ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto
Contains data which uniquely define a dataset.
DatasetIdentifier(String, String) - Constructor for class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetIdentifier
 
DatasetIdentifierPredicate - Class in ch.systemsx.cisd.openbis.dss.screening.shared.api.internal.authorization
Predicate that checks if the user has access to a collection of data set identifiers.
DatasetIdentifierPredicate() - Constructor for class ch.systemsx.cisd.openbis.dss.screening.shared.api.internal.authorization.DatasetIdentifierPredicate
 
DatasetImageRepresentationFormats - Class in ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto
A bean that lists all image representation formats available for a data set.
DatasetImageRepresentationFormats(IDatasetIdentifier, List<ImageRepresentationFormat>) - Constructor for class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetImageRepresentationFormats
Constructor.
DatasetImagesReference - Class in ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto
 
DatasetImagesReference() - Constructor for class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetImagesReference
 
DataSetImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v1.impl
A data set that has already been stored in openBIS.
DataSetImmutable(AbstractExternalData, IEncapsulatedBasicOpenBISService) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetImmutable
 
DataSetImmutable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
A data set that has already been stored in openBIS.
DataSetImmutable(AbstractExternalData, IEncapsulatedBasicOpenBISService) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
 
DataSetInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.DataSetInitializer
 
DataSetKind - Enum in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset
 
DataSetKind - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Enumeration of all possible data set kinds.
DataSetLockOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.lock
 
DataSetLockOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.lock.DataSetLockOptions
 
DataSetMetadataPanel - Class in ch.systemsx.cisd.openbis.dss.client.api.gui
 
DataSetMetadataPanel(DataSetUploadClientModel, JFrame) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.DataSetMetadataPanel
 
DatasetOverlayImagesReference - Class in ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto
 
DatasetOverlayImagesReference() - Constructor for class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetOverlayImagesReference
 
DataSetOwner(NewDataSetDTO.DataSetOwnerType, String) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO.DataSetOwner
 
DataSetParentsSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search
 
DataSetParentsSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.DataSetParentsSearchCriteria
 
DataSetPermId - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.id
Data set perm id.
DataSetPermId(String) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.id.DataSetPermId
 
DataSetPickerDialog - Class in ch.systemsx.cisd.openbis.dss.client.api.gui
Dialog for browsing and picking a data set.
DataSetPickerDialog(JFrame, DataSetUploadClientModel) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.DataSetPickerDialog
 
DataSetPickerPanel - Class in ch.systemsx.cisd.openbis.dss.client.api.gui
 
DataSetPickerPanel(JFrame, DataSetUploadClientModel) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.DataSetPickerPanel
 
DataSetPropertiesPanel - Class in ch.systemsx.cisd.openbis.dss.client.api.gui
 
DataSetPropertiesPanel(DataSetType, DataSetUploadClientModel) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.DataSetPropertiesPanel
 
DataSetPropertiesPanel.Observer - Interface in ch.systemsx.cisd.openbis.dss.client.api.gui
 
DatasetReference - Class in ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto
Description of one plate-based screening dataset.
DatasetReference(String, String, PlateIdentifier) - Constructor for class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetReference
Deprecated.
DatasetReference(String, String, PlateIdentifier, Geometry, Date) - Constructor for class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetReference
Deprecated.
DatasetReference(String, String, PlateIdentifier, ExperimentIdentifier, Geometry, Date, Map<String, String>) - Constructor for class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetReference
Deprecated.
DatasetReference(String, String, String, PlateIdentifier, ExperimentIdentifier, Geometry, Date, Map<String, String>) - Constructor for class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetReference
 
DataSetRegistrationContext - Class in ch.systemsx.cisd.etlserver.registrator
An object that provides the context for a data set registration.
DataSetRegistrationContext(DataSetRegistrationPersistentMap, TopLevelDataSetRegistratorGlobalState, String) - Constructor for class ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationContext
 
DataSetRegistrationContext.IHolder - Interface in ch.systemsx.cisd.etlserver.registrator
 
DataSetRegistrationDetails<T extends ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation> - Class in ch.systemsx.cisd.etlserver.registrator
 
DataSetRegistrationDetails() - Constructor for class ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationDetails
 
DataSetRegistrationPersistentMap - Class in ch.systemsx.cisd.etlserver.registrator
A container for a jython dropbox that can be used to store information during the registration process.
DataSetRegistrationPersistentMap() - Constructor for class ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationPersistentMap
 
DataSetRegistrationPreStagingBehavior - Enum in ch.systemsx.cisd.etlserver.registrator
Configures the behaviour of the original input dataset in a dropbox registration process.
DataSetRegistrationServiceV2<T extends ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation> - Class in ch.systemsx.cisd.etlserver.registrator.api.v2
 
DataSetRegistrationServiceV2(AbstractProgrammableTopLevelDataSetHandler<T>, DataSetFile, DataSetInformation, IDelegatedActionWithResult<Boolean>, ITopLevelDataSetRegistratorDelegate) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationServiceV2
 
DataSetRegistrationTransaction<T extends ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation> - Class in ch.systemsx.cisd.etlserver.registrator.api.v1.impl
The implementation of a transaction.
DataSetRegistrationTransaction(File, File, File, DataSetRegistrationService<T>, IDataSetRegistrationDetailsFactory<T>) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
DataSetRegistrationTransaction<T extends ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation> - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
The implementation of a transaction.
DataSetRegistrationTransaction(File, File, File, DataSetRegistrationService<T>, IDataSetRegistrationDetailsFactory<T>, String) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
DataSetRegistrationTransactionV2Delegate - Class in ch.systemsx.cisd.etlserver.registrator.api.v2
 
DataSetRegistrationTransactionV2Delegate(DataSetRegistrationTransaction<?>) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.DataSetRegistrationTransactionV2Delegate
 
DataSetRelationType - Enum in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.history
 
dataSets() - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.IExperimentAdaptor
Return the datasets belonging to this experiment
dataSets() - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.ISampleAdaptor
Returns data sets of this sample.
DataSetSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search
 
DataSetSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.DataSetSearchCriteria
 
dataSetsOfType(String) - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.IExperimentAdaptor
 
dataSetsOfType(String) - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.ISampleAdaptor
Returns data sets of this sample.
DataSetSortOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions
 
DataSetSortOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions.DataSetSortOptions
 
DataSetTechIdId - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset
Identifies a data set by tech id.
DataSetTechIdId(Long) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset.DataSetTechIdId
 
DataSetType - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset
 
DataSetType() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.DataSetType
 
DataSetType - Class in ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl
 
DataSetType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Immutable value object representing a data set type.
DataSetType(DataSetType.DataSetTypeInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType
Creates a new instance with the provided initializer
DataSetType.DataSetTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize a new DataSetType instance.
DataSetTypeCreation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create
 
DataSetTypeCreation() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create.DataSetTypeCreation
 
DataSetTypeDeletionOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete
 
DataSetTypeDeletionOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete.DataSetTypeDeletionOptions
 
DataSetTypeFetchOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions
 
DataSetTypeFetchOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions.DataSetTypeFetchOptions
 
DataSetTypeFilter - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A class that filters out data set types based on a whitelist or blacklist.
DataSetTypeFilter(String, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetTypeFilter
Constructor
DataSetTypeImmutable - Class in ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl
 
DataSetTypeInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSetType.DataSetTypeInitializer
 
DataSetTypeSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search
 
DataSetTypeSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.DataSetTypeSearchCriteria
 
DataSetTypeSortOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions
 
DataSetTypeSortOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions.DataSetTypeSortOptions
 
DataSetTypeUpdate - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.update
 
DataSetTypeUpdate() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.update.DataSetTypeUpdate
 
DataSetUnarchiveOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.unarchive
 
DataSetUnarchiveOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.unarchive.DataSetUnarchiveOptions
 
DataSetUnlockOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.unlock
 
DataSetUnlockOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.unlock.DataSetUnlockOptions
 
DataSetUpdatable - Class in ch.systemsx.cisd.etlserver.registrator.api.v1.impl
A data set already existing in the openBIS database, that is changed as part of the registration process of another data set.
DataSetUpdatable(AbstractExternalData, IEncapsulatedBasicOpenBISService) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetUpdatable
 
DataSetUpdatable(DataSetImmutable) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetUpdatable
 
DataSetUpdatable - Class in ch.systemsx.cisd.etlserver.registrator.api.v2.impl
A data set already existing in the openBIS database, that is changed as part of the registration process of another data set.
DataSetUpdatable(AbstractExternalData, IEncapsulatedBasicOpenBISService) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetUpdatable
 
DataSetUpdatable(DataSetImmutable) - Constructor for class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetUpdatable
 
DataSetUpdate - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.update
 
DataSetUpdate() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.update.DataSetUpdate
 
DataSetUploadClient - Class in ch.systemsx.cisd.openbis.dss.client.api.gui
The GUI for the WebStart data set upload application.
DataSetUploadClientLoginForm - Class in ch.systemsx.cisd.openbis.dss.client.api.gui
 
DataSetUploadClientLoginForm() - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.DataSetUploadClientLoginForm
Creates new form LoginForm
DataSetUploadClientModel - Class in ch.systemsx.cisd.openbis.dss.client.api.gui.model
 
DataSetUploadClientModel(DssCommunicationState, ITimeProvider, IUserNotifier) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.model.DataSetUploadClientModel
 
DataSetUploadClientModel.NewDataSetInfo - Class in ch.systemsx.cisd.openbis.dss.client.api.gui.model
NewDataSetInfo is a mixture of NewDataSetDTO, which encapsulates information about new data sets, and upload progress state.
DataSetUploadClientModel.NewDataSetInfo.Status - Enum in ch.systemsx.cisd.openbis.dss.client.api.gui.model
 
DataSetUploadClientModel.Observer - Interface in ch.systemsx.cisd.openbis.dss.client.api.gui.model
 
DataSetUploadClientServingServlet - Class in ch.systemsx.cisd.openbis.generic.client.api.gui
 
DataSetUploadClientServingServlet() - Constructor for class ch.systemsx.cisd.openbis.generic.client.api.gui.DataSetUploadClientServingServlet
 
DataSetUploadTableModel - Class in ch.systemsx.cisd.openbis.dss.client.api.gui.model
The DataSetUploadClientModel manages the list of data sets to register, initiates uploads (which run in a separate thread) and notifies the GUI of updates.
DataSetUploadTableModel(DataSetUploadClientModel) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.model.DataSetUploadTableModel
 
DataSetUploadTableModel.ISynchronizer - Interface in ch.systemsx.cisd.openbis.dss.client.api.gui.model
 
DataStore - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore
 
DataStore() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.DataStore
 
DataStore - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
DataStore(String, String, String) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStore
 
DataStoreApiUrlUtilities - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.v1
 
DataStoreFetchOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.fetchoptions
 
DataStoreFetchOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.fetchoptions.DataStoreFetchOptions
 
DataStorePermId - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.id
Data store perm id.
DataStorePermId(String) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.id.DataStorePermId
 
DataStoreSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.search
 
DataStoreSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.search.DataStoreSearchCriteria
 
DataStoreServerProcessingPluginInfo - Class in ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto
Information about a processing plugin on a Data Store Server (DSS).
DataStoreServerProcessingPluginInfo(String, String, List<String>) - Constructor for class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.DataStoreServerProcessingPluginInfo
Create a new instance for specified key, label and data set type codes.
DataStoreSortOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.fetchoptions
 
DataStoreSortOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.fetchoptions.DataStoreSortOptions
 
DataStoreURLForDataSets - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
The data store URL for a set of data sets.
DataStoreURLForDataSets(String, String[]) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataStoreURLForDataSets
 
DataType - Enum in ch.ethz.sis.openbis.generic.asapi.v3.dto.property
 
DataType - Enum in ch.systemsx.cisd.openbis.generic.server.jython.api.v1
Available types for IPropertyType.
DateEarlierThanOrEqualToValue - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
DateEarlierThanOrEqualToValue(String) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.DateEarlierThanOrEqualToValue
 
DateEqualToValue - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
DateFieldSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
DateLaterThanOrEqualToValue - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
DateObjectEarlierThanOrEqualToValue - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
DateObjectEarlierThanOrEqualToValue(Date) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.DateObjectEarlierThanOrEqualToValue
 
DateObjectEqualToValue - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
DateObjectEqualToValue(Date) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.DateObjectEqualToValue
 
DateObjectLaterThanOrEqualToValue - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
DateObjectLaterThanOrEqualToValue(Date) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.DateObjectLaterThanOrEqualToValue
 
DatePropertySearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
deactivate() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.person.update.PersonUpdate
 
dealWithError(Throwable) - Method in interface ch.systemsx.cisd.base.exceptions.IErrorStrategy
Called when an exception ex has occurred.
decNumberOfHyperRows(int) - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
Decrease the number of hyper-rows by count.
DEFAULT_COMPRESS_THUMBNAILS - Static variable in class ch.systemsx.cisd.openbis.dss.etl.dto.api.ThumbnailsStorageFormat
Maximum default width and height of a thumbnail
DEFAULT_DATA_SET_FOLDER_NAME - Static variable in class ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO
 
DEFAULT_ERROR_STRATEGY - Static variable in interface ch.systemsx.cisd.base.exceptions.IErrorStrategy
The default error strategy, just re-throws the exception.
DEFAULT_FILE_NAME - Static variable in class ch.systemsx.cisd.openbis.dss.etl.dto.api.impl.MaximumIntensityProjectionGenerationAlgorithm
 
DEFAULT_KEEP_ALIVE_TIME_MILLIS - Static variable in class ch.systemsx.cisd.base.namedthread.NamingThreadPoolExecutor
The default time (in milli-seconds) to keep threads alive that are above the core pool size.
DEFAULT_THUMBNAIL_MAX_SIZE - Static variable in class ch.systemsx.cisd.openbis.dss.etl.dto.api.ThumbnailsStorageFormat
Maximum default width and height of a thumbnail
DefaultDropbox - Class in ch.systemsx.cisd.etlserver.registrator
Default drop box which can register everything.
DefaultDropbox() - Constructor for class ch.systemsx.cisd.etlserver.registrator.DefaultDropbox
 
DefaultRetryConfiguration - Class in ch.systemsx.cisd.common.api.retry.config
 
DefaultThumbnailsConfiguration - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.thumbnails
 
DefaultThumbnailsConfiguration() - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.thumbnails.DefaultThumbnailsConfiguration
 
DefaultThumbnailsConfiguration - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.thumbnails
This class is obsolete, and should not be used.
DefaultThumbnailsConfiguration() - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.thumbnails.DefaultThumbnailsConfiguration
 
defineFeature(String) - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.IFeaturesBuilder
Defines a container to which values of the feature for each well can be added.
defineFeature(String) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.impl.FeaturesBuilder
Defines a container to which values of the feature for each well can be added.
defineFeature(String) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.impl.FeatureVectorDataSetInformation
Defines a container to which values of the feature for each well can be added.
deleteAndLogIsFinishedMarkerFile(File) - Method in class ch.systemsx.cisd.etlserver.registrator.MarkerFileUtility
 
deleteAuthorizationGroups(String, List<? extends IAuthorizationGroupId>, AuthorizationGroupDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes authorization groups with the provided IAuthorizationGroupId ids.
DeleteAuthorizationGroupsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.delete
 
DeleteAuthorizationGroupsOperation(List<? extends IAuthorizationGroupId>, AuthorizationGroupDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.delete.DeleteAuthorizationGroupsOperation
 
DeleteAuthorizationGroupsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.delete
 
DeleteAuthorizationGroupsOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.delete.DeleteAuthorizationGroupsOperationResult
 
deleteDataSets(String, List<? extends IDataSetId>, DataSetDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Moves data sets with the provided IDataSetId ids to trash.
deleteDataSets(String, List<String>, String, DeletionType) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationChangingService
 
deleteDataSets(String, List<String>, String, DeletionType) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Deletes or trashes the specified data sets depending on the chosen deletion type.
deleteDataSetsForced(String, List<String>, String, DeletionType) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationChangingService
 
deleteDataSetsForced(String, List<String>, String, DeletionType) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Deletes or trashes the specified data sets depending on the chosen deletion type.
DeleteDataSetsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete
 
DeleteDataSetsOperation(List<? extends IDataSetId>, DataSetDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete.DeleteDataSetsOperation
 
DeleteDataSetsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete
 
DeleteDataSetsOperationResult(IDeletionId) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete.DeleteDataSetsOperationResult
 
deleteDataSetTypes(String, List<? extends IEntityTypeId>, DataSetTypeDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes data set types with the provided IEntityTypeId ids.
DeleteDataSetTypesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete
 
DeleteDataSetTypesOperation(List<? extends IEntityTypeId>, DataSetTypeDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete.DeleteDataSetTypesOperation
 
DeleteDataSetTypesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete
 
DeleteDataSetTypesOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete.DeleteDataSetTypesOperationResult
 
DeletedEntity - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
DeletedEntity() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DeletedEntity
 
deleteDetails() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.update.OperationExecutionUpdate
 
DeletedObject - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion
 
DeletedObject() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.DeletedObject
 
DeletedObjectFetchOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.fetchoptions
 
DeletedObjectFetchOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.fetchoptions.DeletedObjectFetchOptions
 
deleteExperiments(String, List<? extends IExperimentId>, ExperimentDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Moves experiments with the provided IExperimentId ids to trash.
deleteExperiments(String, List<Long>, String, DeletionType) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationChangingService
 
deleteExperiments(String, List<Long>, String, DeletionType) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Deletes or trashes the specified experiments depending on the chosen deletion type.
DeleteExperimentsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.delete
 
DeleteExperimentsOperation(List<? extends IExperimentId>, ExperimentDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.delete.DeleteExperimentsOperation
 
DeleteExperimentsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.delete
 
DeleteExperimentsOperationResult(IDeletionId) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.delete.DeleteExperimentsOperationResult
 
deleteExperimentTypes(String, List<? extends IEntityTypeId>, ExperimentTypeDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes experiment types with the provided IEntityTypeId ids.
DeleteExperimentTypesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.delete
 
DeleteExperimentTypesOperation(List<? extends IEntityTypeId>, ExperimentTypeDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.delete.DeleteExperimentTypesOperation
 
DeleteExperimentTypesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.delete
 
DeleteExperimentTypesOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.delete.DeleteExperimentTypesOperationResult
 
deleteExternalDataManagementSystems(String, List<? extends IExternalDmsId>, ExternalDmsDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes external data management systems with the provided IExternalDmsId ids.
DeleteExternalDmsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.delete
 
DeleteExternalDmsOperation(List<? extends IExternalDmsId>, ExternalDmsDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.delete.DeleteExternalDmsOperation
 
DeleteExternalDmsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.delete
 
DeleteExternalDmsOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.delete.DeleteExternalDmsOperationResult
 
deleteFile(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
deleteFile(String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
deleteMaterials(String, List<? extends IMaterialId>, MaterialDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes materials with the provided IMaterialId ids.
DeleteMaterialsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.material.delete
 
DeleteMaterialsOperation(List<? extends IMaterialId>, MaterialDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.material.delete.DeleteMaterialsOperation
 
DeleteMaterialsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.material.delete
 
DeleteMaterialsOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.material.delete.DeleteMaterialsOperationResult
 
deleteMaterialTypes(String, List<? extends IEntityTypeId>, MaterialTypeDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes material types with the provided IEntityTypeId ids.
DeleteMaterialTypesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.material.delete
 
DeleteMaterialTypesOperation(List<? extends IEntityTypeId>, MaterialTypeDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.material.delete.DeleteMaterialTypesOperation
 
DeleteMaterialTypesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.material.delete
 
DeleteMaterialTypesOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.material.delete.DeleteMaterialTypesOperationResult
 
deleteMetaproject(String, IMetaprojectId) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationChangingService
 
deleteMetaproject(String, IMetaprojectId) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Deletes an existing metaproject.
DeleteObjectsOperation<ID extends IObjectId,OPTIONS extends AbstractObjectDeletionOptions<OPTIONS>> - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.delete
 
DeleteObjectsOperation() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.delete.DeleteObjectsOperation
 
DeleteObjectsOperation(List<? extends ID>, OPTIONS) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.delete.DeleteObjectsOperation
 
DeleteObjectsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.delete
 
DeleteObjectsOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.delete.DeleteObjectsOperationResult
 
DeleteObjectsWithoutTrashOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.delete
 
DeleteObjectsWithoutTrashOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.delete.DeleteObjectsWithoutTrashOperationResult
 
DeleteObjectsWithTrashOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.delete
 
DeleteObjectsWithTrashOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.delete.DeleteObjectsWithTrashOperationResult
 
DeleteObjectsWithTrashOperationResult(IDeletionId) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.delete.DeleteObjectsWithTrashOperationResult
 
deleteOperationExecutions(String, List<? extends IOperationExecutionId>, OperationExecutionDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes operation executions with the provided IOperationExecutionId ids.
DeleteOperationExecutionsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.delete
 
DeleteOperationExecutionsOperation(List<? extends IOperationExecutionId>, OperationExecutionDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.delete.DeleteOperationExecutionsOperation
 
DeleteOperationExecutionsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.delete
 
DeleteOperationExecutionsOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.delete.DeleteOperationExecutionsOperationResult
 
deletePermanently(String, List<Long>) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationChangingService
 
deletePermanently(String, List<Long>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Permanently deletes entities moved to trash in specified deletions.
deletePermanentlyForced(String, List<Long>) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationChangingService
 
deletePermanentlyForced(String, List<Long>) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Permanently deletes entities moved to trash in specified deletions.
deletePlugins(String, List<? extends IPluginId>, PluginDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes plugins (i.e.
DeletePluginsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.delete
 
DeletePluginsOperation(List<? extends IPluginId>, PluginDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.delete.DeletePluginsOperation
 
DeletePluginsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.delete
 
DeletePluginsOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.delete.DeletePluginsOperationResult
 
deleteProjects(String, List<? extends IProjectId>, ProjectDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes projects with the provided IProjectId ids.
deleteProjects(String, List<Long>, String) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationChangingService
 
deleteProjects(String, List<Long>, String) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Deletes the specified projects.
DeleteProjectsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.project.delete
 
DeleteProjectsOperation(List<? extends IProjectId>, ProjectDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.project.delete.DeleteProjectsOperation
 
DeleteProjectsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.project.delete
 
DeleteProjectsOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.project.delete.DeleteProjectsOperationResult
 
deletePropertyTypes(String, List<? extends IPropertyTypeId>, PropertyTypeDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes property types with the provided IPropertyTypeId ids.
DeletePropertyTypesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.property.delete
 
DeletePropertyTypesOperation(List<? extends IPropertyTypeId>, PropertyTypeDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.property.delete.DeletePropertyTypesOperation
 
DeletePropertyTypesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.property.delete
 
DeletePropertyTypesOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.property.delete.DeletePropertyTypesOperationResult
 
deleteQueries(String, List<? extends IQueryId>, QueryDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes queries with the provided IQueryId ids.
DeleteQueriesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.query.delete
 
DeleteQueriesOperation(List<? extends IQueryId>, QueryDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.query.delete.DeleteQueriesOperation
 
DeleteQueriesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.query.delete
 
DeleteQueriesOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.query.delete.DeleteQueriesOperationResult
 
deleteRoleAssignments(String, List<? extends IRoleAssignmentId>, RoleAssignmentDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes role assignments with the provided IRoleAssignmentId ids.
DeleteRoleAssignmentsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.delete
 
DeleteRoleAssignmentsOperation(List<? extends IRoleAssignmentId>, RoleAssignmentDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.delete.DeleteRoleAssignmentsOperation
 
DeleteRoleAssignmentsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.delete
 
DeleteRoleAssignmentsOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.delete.DeleteRoleAssignmentsOperationResult
 
deleteSamples(String, List<? extends ISampleId>, SampleDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Moves samples with the provided ISampleId ids to trash.
deleteSamples(String, List<Long>, String, DeletionType) - Method in class ch.systemsx.cisd.openbis.generic.server.api.v1.GeneralInformationChangingService
 
deleteSamples(String, List<Long>, String, DeletionType) - Method in interface ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
Deletes or trashes the specified samples depending on the chosen deletion type.
DeleteSamplesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.delete
 
DeleteSamplesOperation(List<? extends ISampleId>, SampleDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.delete.DeleteSamplesOperation
 
DeleteSamplesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.delete
 
DeleteSamplesOperationResult(IDeletionId) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.delete.DeleteSamplesOperationResult
 
deleteSampleTypes(String, List<? extends IEntityTypeId>, SampleTypeDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes sample types with the provided IEntityTypeId ids.
DeleteSampleTypesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.delete
 
DeleteSampleTypesOperation(List<? extends IEntityTypeId>, SampleTypeDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.delete.DeleteSampleTypesOperation
 
DeleteSampleTypesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.delete
 
DeleteSampleTypesOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.delete.DeleteSampleTypesOperationResult
 
deleteSemanticAnnotations(String, List<? extends ISemanticAnnotationId>, SemanticAnnotationDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes semantic annotations with the provided ISemanticAnnotationId ids.
DeleteSemanticAnnotationsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.delete
 
DeleteSemanticAnnotationsOperation(List<? extends ISemanticAnnotationId>, SemanticAnnotationDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.delete.DeleteSemanticAnnotationsOperation
 
DeleteSemanticAnnotationsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.delete
 
DeleteSemanticAnnotationsOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.delete.DeleteSemanticAnnotationsOperationResult
 
deleteSessionWorkspaceFile(String) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent
Delete a file or directory in the session workspace.
deleteSessionWorkspaceFile(String) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
 
deleteSessionWorkspaceFile(String, String) - Method in class ch.systemsx.cisd.openbis.dss.generic.server.api.v1.DssServiceRpcGeneric
 
deleteSessionWorkspaceFile(String, String) - Method in class ch.systemsx.cisd.openbis.dss.generic.server.api.v1.DssServiceRpcGenericLogger
 
deleteSessionWorkspaceFile(String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
Delete a file or directory in the session workspace.
deleteSpaces(String, List<? extends ISpaceId>, SpaceDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes spaces with the provided ISpaceId ids.
DeleteSpacesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.space.delete
 
DeleteSpacesOperation(List<? extends ISpaceId>, SpaceDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.space.delete.DeleteSpacesOperation
 
DeleteSpacesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.space.delete
 
DeleteSpacesOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.space.delete.DeleteSpacesOperationResult
 
deleteSummary() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.update.OperationExecutionUpdate
 
deleteTags(String, List<? extends ITagId>, TagDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes tags with the provided ITagId ids.
DeleteTagsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.delete
 
DeleteTagsOperation(List<? extends ITagId>, TagDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.delete.DeleteTagsOperation
 
DeleteTagsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.delete
 
DeleteTagsOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.delete.DeleteTagsOperationResult
 
deleteVocabularies(String, List<? extends IVocabularyId>, VocabularyDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes vocabularies with the provided IVocabularyId ids.
DeleteVocabulariesOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.delete
 
DeleteVocabulariesOperation(List<? extends IVocabularyId>, VocabularyDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.delete.DeleteVocabulariesOperation
 
DeleteVocabulariesOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.delete
 
DeleteVocabulariesOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.delete.DeleteVocabulariesOperationResult
 
deleteVocabularyTerms(String, List<? extends IVocabularyTermId>, VocabularyTermDeletionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Permanently deletes vocabulary terms with the provided IVocabularyTermId ids.
DeleteVocabularyTermsOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.delete
 
DeleteVocabularyTermsOperation(List<? extends IVocabularyTermId>, VocabularyTermDeletionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.delete.DeleteVocabularyTermsOperation
 
DeleteVocabularyTermsOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.delete
 
DeleteVocabularyTermsOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.delete.DeleteVocabularyTermsOperationResult
 
Deletion - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion
 
Deletion() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.Deletion
 
Deletion - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
Deletion() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Deletion
 
DeletionFetchOption - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
DeletionFetchOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.fetchoptions
 
DeletionFetchOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.fetchoptions.DeletionFetchOptions
 
DeletionSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.search
 
DeletionSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.search.DeletionSearchCriteria
 
DeletionSortOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.fetchoptions
 
DeletionSortOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.fetchoptions.DeletionSortOptions
 
DeletionTechId - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.id
 
DeletionTechId(Long) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.id.DeletionTechId
 
DeletionType - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Types of deletion operations.
desc() - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.SortOrder
 
DescriptionSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
DescriptionSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.DescriptionSearchCriteria
 
DescriptorAccessionIdSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.search
 
DescriptorAccessionIdSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.search.DescriptorAccessionIdSearchCriteria
 
DescriptorOntologyIdSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.search
 
DescriptorOntologyIdSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.search.DescriptorOntologyIdSearchCriteria
 
DescriptorOntologyVersionSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.search
 
DescriptorOntologyVersionSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.search.DescriptorOntologyVersionSearchCriteria
 
deserializeTypedFromAny(JsonParser, DeserializationContext) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.deserializer.JsonTypeAndClassDeserializer
 
deserializeTypedFromArray(JsonParser, DeserializationContext) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.deserializer.JsonTypeAndClassDeserializer
 
deserializeTypedFromObject(JsonParser, DeserializationContext) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.deserializer.JsonTypeAndClassDeserializer
 
deserializeWithoutType(JsonParser, DeserializationContext, TokenBuffer) - Method in class ch.systemsx.cisd.openbis.common.api.server.json.deserializer.JsonTypeAndClassDeserializer
 
didEncounterSecondaryTransactionErrors(DataSetRegistrationService<T>, DataSetRegistrationTransaction<T>, List<SecondaryTransactionFailure>) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v1.IJavaDataSetRegistrationDropboxV1
 
didEntityOperationsSucceeded(TechId) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
 
didEntityOperationsSucceeded(TechId) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
 
didFinish() - Method in interface ch.systemsx.cisd.openbis.dss.client.api.v1.FileInfoDssDownloader.FileInfoDssDownloaderListener
 
didRollbackStorageAlgorithmRunner(DataSetStorageAlgorithmRunner<T>, Throwable, IDataSetOnErrorActionDecision.ErrorType) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransaction
Delegate method called by the DataSetStorageAlgorithmRunner.
didRollbackStorageAlgorithmRunner(DataSetStorageAlgorithmRunner<T>, Throwable, IDataSetOnErrorActionDecision.ErrorType) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetRegistrationTransaction
Delegate method called by the DataSetStorageAlgorithmRunner.
dimensions - Variable in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
 
dimensions() - Method in class ch.systemsx.cisd.base.mdarray.MDAbstractArray
Returns a copy of the dimensions of the multi-dimensional array.
disableLogging() - Static method in class ch.systemsx.cisd.openbis.dss.client.api.cli.AbstractClient
 
discard() - Method in class ch.systemsx.cisd.etlserver.registrator.api.impl.RollbackStack
Throws away the persistent stack.
displayError(JLabel, JComponent, ErrorsPanel, ValidationError) - Static method in class ch.systemsx.cisd.openbis.dss.client.api.gui.UiUtilities
 
DistinctExceptionsCollection - Class in ch.systemsx.cisd.etlserver.registrator
The collection that behaves like a MultiSet with two Exceptions beeing treaded equal if they have the same class, and their cause exceptions are equal in the same sense.
DistinctExceptionsCollection() - Constructor for class ch.systemsx.cisd.etlserver.registrator.DistinctExceptionsCollection
 
doesUserHaveRole(String, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.AuthorizationService
 
doesUserHaveRole(String, String, String) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.AuthorizationService
 
doesUserHaveRole(String, String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1.authorization.IAuthorizationService
 
doesUserHaveRole(String, String, String) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.authorization.IAuthorizationService
 
DOUBLE_SIZE - Static variable in class ch.systemsx.cisd.base.convert.NativeData
Size of a double value in bytes.
doubleToByte(double[], NativeData.ByteOrder, int, int) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a double[] array to a byte[] array.
doubleToByte(double[], NativeData.ByteOrder) - Static method in class ch.systemsx.cisd.base.convert.NativeData
Converts a double[] array to a byte[] array.
DOWN - Static variable in class ch.systemsx.cisd.openbis.dss.client.api.gui.table.BevelArrowIcon
Constant indicating that the arrow is pointing down.
DOWN - Static variable in class ch.systemsx.cisd.openbis.dss.client.api.gui.table.SortButtonRenderer
Useful constant indicating ASCENDING (that is, arrow pointing down) sorting in the table.
downloadFiles(String, List<? extends IDataSetFileId>, DataSetFileDownloadOptions) - Method in interface ch.ethz.sis.openbis.generic.dssapi.v3.IDataStoreServerApi
Downloads files with the provided IDataSetFileId ids.
downloadFiles() - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.FileInfoDssDownloader
 
downloadTo(File) - Method in class ch.ethz.sis.openbis.generic.dssapi.v3.fastdownload.FastDownloader
Runs the download session an stores all downloaded files in the specified folder.
DropboxUtils - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.utils
 
DropboxUtils() - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.utils.DropboxUtils
 
DropboxUtils - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.utils
This class is obsolete, and should not be used.
DropboxUtils() - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.utils.DropboxUtils
 
DSS_SERVICE_NAME - Static variable in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
 
DssClient - Class in ch.systemsx.cisd.openbis.dss.client.api.cli
The dss command which supports ls — list files in a data set get — get files in a data set put — upload a new data set
DssCommandFactory - Class in ch.systemsx.cisd.openbis.dss.client.api.cli
 
DssCommandFactory() - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.cli.DssCommandFactory
 
DssCommunicationState - Class in ch.systemsx.cisd.openbis.dss.client.api.gui.model
 
DssCommunicationState(String[]) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.model.DssCommunicationState
Create a new instance of the DssCommunicationState based info in the arguments.
DssComponent - Class in ch.systemsx.cisd.openbis.dss.client.api.v1.impl
Implementation of the IDssComponent interface.
DssComponent(IGeneralInformationService, IRpcServiceFactory, String) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssComponent
Constructor for clients that already have an IETLLIMSService; also used for testing.
DssComponentFactory - Class in ch.systemsx.cisd.openbis.dss.client.api.v1
A class that creates DssComponents.
DssComponentFactory() - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.DssComponentFactory
 
DssServicePermId - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.id
 
DssServicePermId(String) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.id.DssServicePermId
 
DssServicePermId(String, IDataStoreId) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.id.DssServicePermId
 
DssServiceRpcFactory - Class in ch.systemsx.cisd.openbis.dss.client.api.v1.impl
Client-side factory for DssServiceRpc objects.
DssServiceRpcFactory() - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssServiceRpcFactory
 
DssServiceRpcFactory(long) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.v1.impl.DssServiceRpcFactory
 
DssServiceRpcGeneric - Class in ch.systemsx.cisd.openbis.dss.generic.server.api.v1
Implementation of the generic RPC interface.
DssServiceRpcGeneric(IEncapsulatedOpenBISService, IQueryApiServer, IPluginTaskInfoProvider) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.server.api.v1.DssServiceRpcGeneric
The designated constructor.
DssServiceRpcGeneric(IEncapsulatedOpenBISService, IQueryApiServer, IPluginTaskInfoProvider, IStreamRepository, IFreeSpaceProvider, IShareIdManager, IHierarchicalContentProvider, PutDataSetService) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.server.api.v1.DssServiceRpcGeneric
A constructor for testing.
DssServiceRpcGenericLogger - Class in ch.systemsx.cisd.openbis.dss.generic.server.api.v1
 
DssServiceRpcScreeningHolder - Class in ch.systemsx.cisd.openbis.dss.screening.shared.api.internal
An object that holds a IDssServiceRpcScreening and its version.
DssServiceRpcScreeningHolder(String, IDssServiceRpcScreening) - Constructor for class ch.systemsx.cisd.openbis.dss.screening.shared.api.internal.DssServiceRpcScreeningHolder
 
DssServiceRpcScreeningHolder(String, int, long) - Constructor for class ch.systemsx.cisd.openbis.dss.screening.shared.api.internal.DssServiceRpcScreeningHolder
 
DssServiceRpcScreeningMultiplexer - Class in ch.systemsx.cisd.openbis.dss.screening.shared.api.internal
 
DssServiceRpcScreeningMultiplexer(IMultiplexer, IDssServiceRpcScreeningFactory) - Constructor for class ch.systemsx.cisd.openbis.dss.screening.shared.api.internal.DssServiceRpcScreeningMultiplexer
 
DssSessionAuthorizationHolder - Class in ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization
Holder object for IDssSessionAuthorizer.
DssSessionAuthorizationHolder() - Constructor for class ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.DssSessionAuthorizationHolder
 

E

EchoDatabase - Class in ch.systemsx.cisd.openbis.dss.generic.server.api.v2.sequencedatabases
A test database that returns a search result that was stored in the parameters map under a key equal to the searched sequence snippet.
EchoDatabase(Properties, File) - Constructor for class ch.systemsx.cisd.openbis.dss.generic.server.api.v2.sequencedatabases.EchoDatabase
 
EchoDatabase.HelperBean - Class in ch.systemsx.cisd.openbis.dss.generic.server.api.v2.sequencedatabases
 
EMailAddress - Class in ch.systemsx.cisd.common.mail
A class to represent an email address.
EMailAddress(String) - Constructor for class ch.systemsx.cisd.common.mail.EMailAddress
 
EMailAddress(String, String) - Constructor for class ch.systemsx.cisd.common.mail.EMailAddress
 
EmailSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.person.search
 
EmailSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.person.search.EmailSearchCriteria
 
EmptyFetchOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions
 
EmptyFetchOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.EmptyFetchOptions
 
EmptyImageCreationAlgorithm - Class in ch.systemsx.cisd.openbis.dss.etl.dto.api.impl
 
EmptyImageCreationAlgorithm() - Constructor for class ch.systemsx.cisd.openbis.dss.etl.dto.api.impl.EmptyImageCreationAlgorithm
 
enableDebugLogging() - Static method in class ch.systemsx.cisd.openbis.dss.client.api.cli.AbstractClient
 
EncapsulatedCommonServer - Class in ch.systemsx.cisd.openbis.generic.server.jython.api.v1.impl
 
ensureNativeLibIsLoaded() - Static method in class ch.systemsx.cisd.base.convert.NativeData
Call to ensure that the native library is loaded.
ensureValid(boolean) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.ImageMetadata
Validates that tile number, channel and well (if argument is false) have been specified.
EntityKind - Enum in ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype
Entity kind.
EntityKind - Enum in ch.systemsx.cisd.openbis.generic.server.jython.api.v1
Available entity kinds.
EntityKind - Enum in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
 
EntityKindSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.search
 
EntityKindSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.search.EntityKindSearchCriteria
 
EntityLinkElementKind - Enum in ch.systemsx.cisd.openbis.generic.shared.managed_property.api
The type of an entity link.
EntityPropertyBlastSearchResultLocation - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Extension of EntityPropertySearchResultLocation for BLAST search.
EntityPropertyBlastSearchResultLocation() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityPropertyBlastSearchResultLocation
 
EntityPropertySearchResultLocation - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Result location for a search in a sequence in an entity property.
EntityPropertySearchResultLocation() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityPropertySearchResultLocation
 
EntityRegistrationDetails - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
A class that encapsulates the details about entity registration.
EntityRegistrationDetails(EntityRegistrationDetails.EntityRegistrationDetailsInitializer) - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
EntityRegistrationDetails.EntityRegistrationDetailsInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Class used to initialize an EntityRegistrationDetails object.
EntityRegistrationDetailsInitializer() - Constructor for class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails.EntityRegistrationDetailsInitializer
 
EntitySortOptions<OBJECT extends ICodeHolder & IPermIdHolder & IRegistrationDateHolder & IModificationDateHolder> - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions
 
EntitySortOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.EntitySortOptions
 
EntityType - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Common attributes of all entity types.
EntityTypeCodePatternSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.query.search
 
EntityTypeCodePatternSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.query.search.EntityTypeCodePatternSearchCriteria
 
EntityTypeFetchOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.fetchoptions
 
EntityTypeFetchOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.fetchoptions.EntityTypeFetchOptions
 
EntityTypeInitializer - Class in ch.systemsx.cisd.openbis.generic.shared.api.v1.dto
Generic part of all entity type initializers.
EntityTypePermId - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.id
Entity type perm id.
EntityTypePermId(String) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.id.EntityTypePermId
 
EntityTypePermId(String, EntityKind) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.id.EntityTypePermId
 
EntityTypeSearchCriteria - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.search
 
EntityTypeSearchCriteria() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.search.EntityTypeSearchCriteria
 
EntityTypeSortOptions - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.fetchoptions
 
EntityTypeSortOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.fetchoptions.EntityTypeSortOptions
 
EntityWithPropertiesSortOptions<OBJECT extends ICodeHolder & IPermIdHolder & IRegistrationDateHolder & IModificationDateHolder & IPropertiesHolder> - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions
 
EntityWithPropertiesSortOptions() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.EntityWithPropertiesSortOptions
 
EnumFieldSearchCriteria<T extends java.lang.Enum<?>> - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search
 
EnumFieldSearchCriteria(String, SearchFieldType) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.EnumFieldSearchCriteria
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.attachment.id.AttachmentFileName
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.fetchoptions.view.AbstractCollectionView
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.id.CreationId
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.id.ObjectIdentifier
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.id.ObjectPermId
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.id.ObjectTechId
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.AbstractSearchCriteria
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.IdSearchCriteria
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.TableColumn
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.TableDoubleCell
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.TableLongCell
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.common.TableStringCell
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.id.LocatorTypePermId
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.id.StorageFormatPermId
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.id.EntityTypePermId
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.material.id.MaterialPermId
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.OperationExecutionError
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.property.id.PropertyAssignmentPermId
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.query.id.QueryDatabaseName
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.query.id.QueryName
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.id.DssServicePermId
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.id.TagCode
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.id.VocabularyTermPermId
 
equals(Object) - Method in class ch.ethz.sis.openbis.generic.dssapi.v3.dto.datasetfile.id.DataSetFilePermId
 
equals(Object) - Method in class ch.systemsx.cisd.base.io.AdapterIInputStreamToInputStream
 
equals(Object) - Method in class ch.systemsx.cisd.base.io.AdapterInputStreamToIInputStream
 
equals(Object) - Method in class ch.systemsx.cisd.base.io.AdapterIOutputStreamToOutputStream
 
equals(Object) - Method in class ch.systemsx.cisd.base.io.AdapterOutputStreamToIOutputStream
 
equals(Object) - Method in class ch.systemsx.cisd.base.io.RandomAccessFileImpl
 
equals(Object) - Method in class ch.systemsx.cisd.base.mdarray.MDArray
 
equals(Object) - Method in class ch.systemsx.cisd.base.mdarray.MDByteArray
 
equals(Object) - Method in class ch.systemsx.cisd.base.mdarray.MDDoubleArray
 
equals(Object) - Method in class ch.systemsx.cisd.base.mdarray.MDFloatArray
 
equals(Object) - Method in class ch.systemsx.cisd.base.mdarray.MDIntArray
 
equals(Object) - Method in class ch.systemsx.cisd.base.mdarray.MDLongArray
 
equals(Object) - Method in class ch.systemsx.cisd.base.mdarray.MDShortArray
 
equals(Object) - Method in class ch.systemsx.cisd.base.unix.Unix.Time
 
equals(Object) - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO
 
equals(Object) - Method in class ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO
 
equals(Object) - Method in class ch.systemsx.cisd.common.mail.EMailAddress
 
equals(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetImmutable
 
equals(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ExperimentImmutable
 
equals(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.MaterialImmutable
 
equals(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.ProjectImmutable
 
equals(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v1.impl.SampleImmutable
 
equals(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.DataSetImmutable
 
equals(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ExperimentImmutable
 
equals(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.MaterialImmutable
 
equals(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.ProjectImmutable
 
equals(Object) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.impl.SampleImmutable
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.HierarchicalContentProxy
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.dss.client.api.gui.model.ValidatedFile
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.ChannelColorRGB
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.ImageIdentifier
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.Location
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.impl.FeatureVectorDataSet
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.v2.impl.FeatureVectorDataSet
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Attachment
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityRegistrationDetails
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.EntityType
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Experiment
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.dataset.DataSetCodeId
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectIdentifierId
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectPermIdId
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.id.ObjectTechIdId
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialIdentifier
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.MaterialTypeIdentifier
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Project
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyType
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.PropertyTypeGroup
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Role
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.TimeAttributeMatchClause
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.ValidationPluginInfo
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Vocabulary
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.VocabularyTerm
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.proteomics.shared.api.v1.dto.PropertyKey
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto.QueryDescription
Returns true if and only if the specified object is of type QueryDescription and has the same ID as this.
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ExampleImageTransformerFactory
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetIdentifier
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetImageRepresentationFormats
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureInformation
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorDataset
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorDatasetWellReference
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorWithDescription
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Geometry
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageChannel
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageRepresentationFormat
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageRepresentationFormat.ImageRepresentationTransformation
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageSize
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageTransformationInfo
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.MaterialIdentifier
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.MaterialTypeIdentifier
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.MicroscopyImageReference
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PermanentIdentifier
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateIdentifier
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateImageReference
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateWellReferenceWithDatasets
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.WellIdentifier
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.WellMetadata
 
equals(Object) - Method in class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.WellPosition
 
error(String) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDSSRegistrationLogger
 
error(String, Throwable) - Method in interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDSSRegistrationLogger
 
ErrorMessageDialog - Class in ch.systemsx.cisd.openbis.dss.client.api.gui
 
ErrorMessageDialog(JFrame) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.ErrorMessageDialog
 
ErrorsPanel - Class in ch.systemsx.cisd.openbis.dss.client.api.gui
 
ErrorsPanel(JFrame) - Constructor for class ch.systemsx.cisd.openbis.dss.client.api.gui.ErrorsPanel
 
escape(String) - Static method in class ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
Returns a String where those characters that Lucene expects to be escaped are escaped by a preceding \.
establishSampleLinkForContainedDataSets() - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.IImageDataSet
Deprecated.
this method is for backwards compatibility only
establishSampleLinkForContainedDataSets() - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.impl.ImageContainerDataSet
 
establishSampleLinkForContainedDataSets() - Method in interface ch.systemsx.cisd.openbis.dss.etl.dto.api.v2.IImageDataSet
Deprecated.
this method is for backwards compatibility only
establishSampleLinkForContainedDataSets() - Method in class ch.systemsx.cisd.openbis.dss.etl.dto.api.v2.impl.ImageContainerDataSet
 
establishService(Class<? extends IRpcService>, IRpcService, String, String) - Method in class ch.systemsx.cisd.openbis.common.api.server.AbstractApiJsonServiceExporter
Establishes the specified service which implements the specified interface.
establishService(Class<? extends IRpcService>, IRpcService, String, String) - Method in class ch.systemsx.cisd.openbis.common.api.server.AbstractApiServiceExporter
Establishes the specified service which implements the specified interface.
establishService(Class<? extends IRpcService>, IRpcService, String, String) - Method in class ch.systemsx.cisd.openbis.common.api.server.AbstractStreamSupportingApiServiceExporter
Establishes the specified service which implements the specified interface.
eval(IEntityAdaptor) - Method in interface ch.systemsx.cisd.openbis.generic.server.dataaccess.dynamic_property.calculator.api.IDynamicPropertyCalculator
 
evaluate(T, String, D) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.AbstractDataSetAccessPredicate
 
evaluate(IDssServiceRpcGeneric, String, NewDataSetDTO) - Method in class ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.NewDataSetPredicate
 
evaluate(T, String, D) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1.authorization.IAuthorizationGuardPredicate
Evaluate the predicate for the receiver object, sessionToken, and predicate argument.
evaluate(T, String, D) - Method in interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.authorization.IAuthorizationGuardPredicate
Evaluate the predicate for the receiver object, sessionToken, and predicate argument.
ExampleImageTransformerFactory - Class in ch.systemsx.cisd.openbis.plugin.screening.client.api.v1
 
ExampleImageTransformerFactory(String) - Constructor for class ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ExampleImageTransformerFactory
 
ExampleImageTransformerFactory(int) - Constructor for class ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ExampleImageTransformerFactory
 
ExampleImageTransformerFactory(String, int) - Constructor for class ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ExampleImageTransformerFactory
 
exceptionOccured(Throwable) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.gui.IProgressListener
 
executableExists(String) - Static method in class ch.systemsx.cisd.base.utilities.OSUtilities
 
executableExists(File) - Static method in class ch.systemsx.cisd.base.utilities.OSUtilities
 
execute() - Method in class ch.systemsx.cisd.etlserver.registrator.api.impl.MkdirsCommand
 
execute() - Method in class ch.systemsx.cisd.etlserver.registrator.api.impl.MoveFileCommand
 
execute() - Method in class ch.systemsx.cisd.etlserver.registrator.api.impl.NewFileCommand
 
execute() - Method in class ch.systemsx.cisd.etlserver.registrator.api.impl.NewLinkCommand
 
execute() - Method in interface ch.systemsx.cisd.etlserver.registrator.ITransactionalCommand
Provisionally execute the actions requested by this step.
execute() - Method in interface ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentExecuteOnAccess
 
execute(String[]) - Method in class ch.systemsx.cisd.openbis.dss.client.api.cli.CommandHelp
 
execute(String[]) - Method in class ch.systemsx.cisd.openbis.dss.client.api.cli.CommandTestExtractMetadata
 
execute(String[]) - Method in interface ch.systemsx.cisd.openbis.dss.client.api.cli.ICommand
Calls this ICommand with given arguments.
executeAggregationService(String, IDssServiceId, AggregationServiceExecutionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Executes an aggregation service with the provided IDssServiceId id.
ExecuteAggregationServiceOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute
 
ExecuteAggregationServiceOperation(IDssServiceId, AggregationServiceExecutionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute.ExecuteAggregationServiceOperation
 
ExecuteAggregationServiceOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute
 
ExecuteAggregationServiceOperationResult(TableModel) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute.ExecuteAggregationServiceOperationResult
 
executeCustomASService(String, ICustomASServiceId, CustomASServiceExecutionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Executes a custom application server service with the provided ICustomASServiceId id.
ExecuteCustomASServiceOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute
 
ExecuteCustomASServiceOperation(ICustomASServiceId, CustomASServiceExecutionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute.ExecuteCustomASServiceOperation
 
ExecuteCustomASServiceOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute
 
ExecuteCustomASServiceOperationResult(Object) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute.ExecuteCustomASServiceOperationResult
 
executeJythonScript(DataSetFile, String, JythonTopLevelDataSetHandlerV2.JythonDataSetRegistrationService<T>) - Method in class ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
 
executeOperations(String, List<? extends IOperation>, IOperationExecutionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Executes all provided operations in one transaction.
executeProcessingService(String, IDssServiceId, ProcessingServiceExecutionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Executes a processing service with the provided IDssServiceId id.
ExecuteProcessingServiceOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute
 
ExecuteProcessingServiceOperation(IDssServiceId, ProcessingServiceExecutionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute.ExecuteProcessingServiceOperation
 
ExecuteProcessingServiceOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute
 
ExecuteProcessingServiceOperationResult() - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute.ExecuteProcessingServiceOperationResult
 
executeQuery(String, IQueryId, QueryExecutionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Executes a query with the provided IQueryId id.
executeQuery(long, Map<String, String>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.client.api.v1.IQueryApiFacade
Executes specified query by using specified parameter bindings.
executeQuery(String, long, Map<String, String>) - Method in class ch.systemsx.cisd.openbis.plugin.query.server.api.v1.QueryApiServer
 
executeQuery(String, long, Map<String, String>) - Method in interface ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.IQueryApiServer
Executes specified query using specified parameter bindings.
ExecuteQueryOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.query.execute
 
ExecuteQueryOperation(IQueryId, QueryExecutionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.query.execute.ExecuteQueryOperation
 
ExecuteQueryOperationResult - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.query.execute
 
ExecuteQueryOperationResult(TableModel) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.query.execute.ExecuteQueryOperationResult
 
executeReportingService(String, IDssServiceId, ReportingServiceExecutionOptions) - Method in interface ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi
Executes a reporting service with the provided IDssServiceId id.
ExecuteReportingServiceOperation - Class in ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute
 
ExecuteReportingServiceOperation(IDssServiceId, ReportingServiceExecutionOptions) - Constructor for class ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute.ExecuteReportingServiceOperation
 
ExecuteReporti