ch.systemsx.cisd.openbis.dss.etl.dto.api.v2

Interface IImageDataSet

All Superinterfaces:

IDataSet, IDataSetImmutable, IDataSetUpdatable, IMetaprojectContent

All Known Implementing Classes:

ImageContainerDataSet

public interface IImageDataSet
extends IDataSet

Container image dataset which contains original and thumbnail physical datasets.

Method Summary

Modifier and Type	Method and Description
void	establishSampleLinkForContainedDataSets() Deprecated. this method is for backwards compatibility only
java.lang.String	figureGeometry() Utility method to find out the plate geometry by looking for which wells images are available.
IDataSet	getOriginalDataset()
java.util.List<IDataSet>	getThumbnailDatasets()
void	setAnalysisProcedure(java.lang.String analysisProcedure) Sets analysis procedure.

Methods inherited from interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSet

setDataSetKind, setDataSetType, setMeasuredData, setSpeedHint

Methods inherited from interface ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetUpdatable

setContainedDataSetCodes, setExperiment, setExternalCode, setExternalDataManagementSystem, setFileFormatType, setParentDatasets, setPropertyValue, setSample

Methods inherited from interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IDataSetImmutable

getAllPropertyCodes, getChildrenDataSets, getContainedDataSetCodes, getContainerDataSet, getContainerDataSets, getDataSetCode, getDataSetKind, getDataSetType, getDataSetTypeWithPropertyTypes, getExperiment, getExternalCode, getExternalDataManagementSystem, getFileFormatType, getOrderInContainer, getParentDatasets, getPropertyValue, getSample, getSpeedHint, isContainedDataSet, isContainerDataSet, isLinkDataSet, isMeasuredData, isNoFileDataSet, isPostRegistered

Methods inherited from interface ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IMetaprojectContent

getEntityId

Method Detail

getOriginalDataset

IDataSet getOriginalDataset()

getThumbnailDatasets

java.util.List<IDataSet> getThumbnailDatasets()

setAnalysisProcedure

void setAnalysisProcedure(java.lang.String analysisProcedure)

Sets analysis procedure. Makes sense only for segmentation datasets.

establishSampleLinkForContainedDataSets

@Deprecated
void establishSampleLinkForContainedDataSets()

Deprecated. this method is for backwards compatibility only

If this method is called the contained data sets (original data set and thumbnails) will automatically linked to the sample specified by IDataSetUpdatable.setSample(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISampleImmutable) . By default there will be no such links.

figureGeometry

java.lang.String figureGeometry()

Utility method to find out the plate geometry by looking for which wells images are available.

Returns:

a constant which can be used as a vocabulary term value for $PLATE_GEOMETRY property of a plate/

Throws:

ch.systemsx.cisd.common.exceptions.UserFailureException - if all available geometries in openBIS are too small (there is a well outside).